- Transcript 'KH2012:KH.C4.531.v2....' >
- Transcript 'KH2012:KH.C4.133.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.133.v1.A.SL1-1
Possible name(s)
GAPVD1; RABGEF1; RIN3
Gene model
Location
KhC4 [4,489,738 / 4,496,635]
Amino acid sequence
Length: 578
>KH.C4.133.v1.A.SL1-1
VIFFYNVNVLMQKIMERNASQSNSRRGIHVDQSELMCKNGCGFYGNSQWQGYCSKCWRDI
YTQNQQKLQQQIDLDHEYAMKLQKEEDNQHPPPESIIPSSNPSLPQTPVSRHPVVNQSPA
PKLEALDSSFKQFEDKRVHTKGFRGRGFKKFFSPSSEQTTVSPLVAKTKSPPTRKSIQSP
SSWLFAERQQSFESKRASKDFVDFIVAFQEPAAKDVLKKCKEFMDKLVSNKENSIDEKSD
MVQDFYQVMAERLMSHPNFKSYTYEEDRNKIMDNIEKFIMTRIYRDVFCNDQTDDEIEDL
KVQTRIRNLHWITAAMLDANVDTSKPFVSECADKAITAIIEMDSKRAPQDKLTCVTRCSK
SVFEAIRHSKPDDTPASADDYLPALIYIILKANPPLLKSNIRYITRFSNPIHIMSGEDAY
YFTNLCCAVSFIENEETGLNASSLSLTEIEFGAYMRGEMPTSEKSELKERELCAGLQLMY
KNLNDLASLHERTDRLFDEAMQMKKGIQRHSLHVKEQVEKMLSETTPLPEAASTNGPPNY
SHDETAIDIRSRSSSALDEDLFDAGLLPPPLLPTVAHR
Nucleotide sequence
Length: 2,032
>KH2012:KH.C4.133.v1.A.SL1-1
AACTAGGTTATTTTTTTCTATAATGTTAATGTGCTAATGCAAAAAATAATGGAACGAAAT
GCAAGTCAAAGCAACTCTAGAAGGGGCATCCATGTTGATCAATCAGAATTAATGTGCAAG
AATGGATGTGGATTTTACGGGAACTCACAATGGCAGGGTTACTGTTCAAAATGTTGGCGT
GACATTTACACACAAAACCAGCAAAAGTTGCAGCAGCAGATTGATCTGGATCATGAGTAT
GCAATGAAGTTACAAAAAGAGGAGGACAACCAACATCCTCCTCCAGAGTCCATCATCCCA
TCCTCCAATCCATCTCTTCCTCAAACTCCTGTCTCCCGTCATCCCGTTGTAAACCAATCT
CCAGCTCCAAAGTTGGAAGCCTTAGACAGTTCATTCAAGCAATTTGAAGACAAGCGAGTT
CACACTAAAGGTTTCAGGGGACGAGGCTTCAAAAAGTTTTTTTCCCCTTCATCTGAACAA
ACAACCGTCTCACCATTGGTGGCTAAAACTAAATCACCTCCTACAAGAAAATCCATTCAA
AGTCCTTCAAGTTGGCTGTTTGCTGAACGTCAACAAAGTTTTGAAAGCAAGCGAGCTTCA
AAAGACTTTGTGGACTTCATCGTTGCATTTCAAGAACCTGCAGCTAAAGATGTGCTCAAG
AAATGCAAGGAATTTATGGATAAACTTGTTTCTAATAAGGAAAACAGCATAGATGAAAAA
TCTGACATGGTTCAAGATTTTTACCAAGTGATGGCTGAACGACTGATGTCTCATCCTAAC
TTCAAGAGTTACACTTATGAGGAAGATAGAAACAAAATTATGGACAATATCGAGAAGTTT
ATTATGACACGAATTTACAGAGATGTATTTTGTAATGATCAAACAGATGATGAAATTGAA
GATTTAAAAGTTCAGACACGAATTCGAAACCTGCACTGGATAACAGCAGCTATGCTCGAT
GCTAATGTTGATACAAGCAAACCATTTGTGTCTGAGTGTGCTGACAAAGCTATCACTGCC
ATTATTGAAATGGATTCAAAGCGAGCTCCACAAGATAAGTTGACGTGCGTTACACGATGT
AGTAAAAGTGTTTTTGAAGCTATCCGACATTCAAAGCCTGACGACACACCGGCAAGTGCA
GATGATTATCTTCCAGCACTCATCTACATAATATTGAAAGCCAATCCTCCATTATTAAAA
TCTAATATCCGATATATCACCCGATTCTCCAACCCCATCCATATTATGTCTGGTGAGGAT
GCTTACTACTTTACTAACTTGTGTTGTGCTGTGAGTTTCATTGAAAACGAGGAGACGGGT
TTAAACGCTTCAAGTTTGTCTTTGACTGAGATTGAGTTCGGTGCTTACATGAGAGGAGAG
ATGCCGACAAGTGAGAAAAGTGAATTAAAAGAGAGAGAGTTATGTGCGGGGTTGCAACTC
ATGTATAAGAACCTTAATGATCTTGCATCTCTTCATGAAAGAACTGATAGATTATTTGAC
GAAGCTATGCAAATGAAGAAAGGAATACAGCGACACTCACTACACGTAAAAGAACAGGTT
GAGAAGATGCTTTCAGAAACGACTCCTTTACCAGAAGCAGCTTCTACTAATGGACCACCA
AATTATTCTCATGATGAAACCGCAATTGATATTCGGTCTCGGTCATCCTCTGCTTTAGAT
GAAGATTTATTTGATGCAGGTTTATTACCTCCTCCACTACTGCCCACTGTAGCACATAGA
TAGTTTTCCAATATAACGCTGTTTCTTCTATACTTTGTGGTGCACACTTTGCAATACTAA
TTCCATGTGCATTTTTCGAAACTTTGAAAAAATAAAAATTTGTTGTTCTACATTACTGCA
TTAGTTTATAGTACAACATGCATTACACTTATAGTTTTGTATAGAAAAAAGTTTGGCACA
TTATTGTTTTGTTTCGAATATATTTTTCCAAATACTTACTGCTCCCTAAATACTATCCTA
TTATTCCTATTATTATTTTTGATTTCAAATCGAAATAAAGAAACATAAAATG
| ProSiteProfiles |
Znf_A20 (IPR002653) - T[31-65] 10.178 |
| SMART |
Znf_A20 (IPR002653) - T[34-58] 9.7E-9 |
| Pfam |
Znf_A20 (IPR002653) - T[35-58] 2.9E-12 |
| SUPERFAMILY |
VPS9_dom_sf (IPR037191) - T[198-446] 5.75E-63 |
| Gene3D |
VPS9_dom_sf (IPR037191) - T[292-466] 1.5E-58 |
| ProSiteProfiles |
VPS9 (IPR003123) - T[296-441] 35.359 |
| SMART |
VPS9 (IPR003123) - T[326-448] 1.1E-16 |
| Pfam |
VPS9 (IPR003123) - T[334-435] 1.1E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GAPD1_HUMAN | 26.728 % | 91.7 | 3.82E-19 |
| RABX5_HUMAN | 37.198 % | 372 | 1.35E-120 |