- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Clone 'ciad079n17' >
- Transcript 'KH2012:KH.C1.866.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.866.v1.A.ND1-1
Possible name(s)
RDH11; RDH12; RDH14
Gene model
Location
KhC1 [926,653 / 930,283]
Amino acid sequence
Length: 322
>KH.C1.866.v1.A.ND1-1
MQARYRLLSGFVGSLSKMVKSARGSWVRSDVKMTGKTVVITGANTGIGLETAIDLVKREA
RVILGCRNMEKAEEAKQRIFKEAGGKDDTVVIKQLDLSSLASVRAFAKDINDNESKIDVL
LNNAGIMLVPKGKTEDGFELHYGVNHLGHFLLTNLLLDLIKRSAPSRIVTVSSEAHRLGT
PKIDFKDMNFDNNYDESVAYGRSKLMNILFTKELSKRLEGTNVTANCLHPGVIKSELWRH
MDGSRKPVRDFFVGTFVRWFGKTIIHGAQTNIYCCMAPEIEDVTGKYFSDCAVASENSQA
KKDKNAEQLWQVSLQATGLSEA
Nucleotide sequence
Length: 1,708
>KH2012:KH.C1.866.v1.A.ND1-1
TGCCTAGTCATGGTGACAGAGAAACTCGTGTTATATTAGCCGGAGTAGCAATTAGTTATT
GATTCAAGTTAGATGCAAGCAAGGTACAGGTTGTTAAGTGGATTTGTAGGTTCTTTGTCA
AAAATGGTCAAGTCTGCACGTGGTAGTTGGGTACGGAGCGATGTCAAAATGACAGGGAAA
ACGGTCGTAATAACAGGCGCTAATACTGGAATCGGGTTGGAAACAGCAATCGACCTTGTA
AAGCGTGAAGCAAGAGTAATTCTCGGCTGCAGAAACATGGAGAAAGCAGAAGAAGCAAAG
CAAAGGATTTTTAAAGAAGCTGGCGGCAAAGATGACACAGTCGTTATAAAGCAACTAGAT
TTGTCATCGTTGGCCTCAGTGCGGGCGTTCGCAAAGGATATAAATGACAACGAAAGCAAG
ATTGATGTTTTGTTGAACAACGCAGGTATAATGCTGGTGCCAAAAGGAAAGACTGAAGAC
GGGTTTGAGCTTCACTACGGAGTAAACCATCTCGGGCATTTTCTTCTTACTAATCTATTA
CTCGATCTTATAAAGAGAAGCGCACCCAGTCGAATCGTCACCGTTTCCTCTGAAGCCCAT
CGACTTGGGACCCCAAAAATTGATTTTAAAGACATGAATTTCGACAATAACTACGACGAG
TCTGTGGCGTACGGAAGAAGCAAATTAATGAACATCTTGTTTACTAAAGAACTTAGTAAA
CGCCTTGAAGGTACAAATGTTACCGCTAATTGCTTACACCCCGGTGTGATTAAATCTGAG
CTATGGCGACACATGGATGGATCAAGGAAACCAGTCCGAGACTTCTTCGTTGGTACATTT
GTACGGTGGTTTGGTAAGACCATAATACACGGCGCACAGACAAATATATACTGTTGTATG
GCCCCTGAAATTGAAGACGTCACGGGAAAGTATTTCAGCGATTGCGCGGTTGCAAGTGAA
AACAGCCAAGCAAAGAAGGATAAAAATGCAGAACAACTGTGGCAAGTCAGTCTCCAAGCG
ACCGGACTATCCGAAGCATAGACCCAACGGACAAATACTATTATATATATAAATTTATAT
ATGTCCCATCTTCTCCCACCCTACTATATATTTTTTGTACTACCTTTGCCGTCTTGTAAT
GTGTTTCATTTTAGTTAAAACAGCATTAATTTTAGTGTATAATGATTTATTTTTTTGGCT
AATTAACGATGATATATATACATATATGGATATGTTATCAATTTCAAATTTTGATATCTT
GGGAACCATTCTCACGTTATACCGTGACTTACTTTAAAAAAAGTTATTTATTATATTAAG
TTATACTTTGCCTTCTAAAGTCCGCAGTGTGAGAAATAGAAATACCAACGTTCTTTCGTT
ATCTCTCTCTCTCTTCTCTCGTTGGTTTTTCTTTAATACTCTCGTCTTTTTTGCACACCC
CCAGACGACACCGACGGTGCATTCGTTCCGTCTTGGTCTTGGTACAGATCGTTTTTTTTT
GTAGCTTTACTAGCTTATGCCCTATGGTGCAACACAGTAAGGCACTGGCTTGATAATTTA
TGATTAAAAATACGTTATAATTGTAATTGGTTGAATATACTTTTGGTGCTAGTGAAGAAT
TTTCCCCCTTGCCAAGGAAAAAACGAGAGACTAAAAAAGAAAAAAGAAAATCATTGGACC
GTAACGGTATTTTTTTTTAACGTTTAAG
| SUPERFAMILY |
NAD(P)-bd_dom_sf (IPR036291) - T[33-293] 1.33E-58 |
| Pfam |
SDR_fam (IPR002347) - T[36-180] 6.2E-25 |
| PRINTS |
SDR_fam (IPR002347) - T[37-54] 8.7E-16 - T[115-126] 3.5E-5 - T[115-126] 8.7E-16 - T[160-176] 8.7E-16 - T[166-174] 3.5E-5 - T[200-219] 3.5E-5 - T[200-219] 8.7E-16 - T[221-238] 8.7E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RDH11_HUMAN | 47.651 % | 253 | 7.27E-83 |
| RDH14_HUMAN | 49.164 % | 260 | 1.65E-85 |
| RDH12_HUMAN | 46.688 % | 258 | 4.75E-85 |