- Transcript 'Haaura.CG.MTP2014.S1...' >
- Molecular Tool 'Compound E (ab142164)' >
- Transcript 'KH2012:KH.C1.488.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.488.v1.A.SL1-1
Possible name(s)
ZNF143; ZNF554; ZNF76
Gene model
Location
KhC1 [4,744,946 / 4,752,833]
Amino acid sequence
Length: 718
>KH.C1.488.v1.A.SL1-1
CIRQLKFVQSTHSRMNCAVEPDLERDELQIDVSVSGESVVSFQDGQEVQLDDGSTALIFH
QAKDSYPLELGQPIQLENGSTAYLYHTKANTVNDVEQTSEENKTEGEEEVDMQLTDVSWV
SSSSTESKVFKCDFGTCNKVYTTAHHLKVHKRVHTGEKPYKCNWKNCEKVFMTSYSLKSH
HRVHTGEKPYPCPHTSCSKAFKTAGDLQKHIRTHTGEKPFKCPFEGCEKAFTTSNICKVH
IRTHTGERPYTCPYEDCKKSFSNITNYRNHTRIHTGEKPYVCAVGNCKKQFTEYSSLYKH
QIVHSIAKPYACHYCGKLYRQTSTLVIHKRKVHKDDSGVTEEDFVQIPNNIGKEGSAKSY
ENTRMDHMHSMNNANNKVESPVASVVVLPMNNTQNPVIINPSTPTQSQLPTSITTMSSNN
TNRDQQLVVTLNDNVTLATAASDKVTNQFLQDFASNKKDEGELFISEDPDNVAVDISSNA
GISEAATSSFNSDIWVNYSTENQDINKQVEEDQYSVATLVIDGTNYLVQVVNEPDQSQCS
VDQESIVNALTSSVLTTPLGGSKGPDVELPLVGNLILHTQPSGEISTGNDISIDLNSSTT
SCATGSRLISDMIQDVSQINSQCDVNFQQATTTFLCNQPTNPILTFTNQNSVTSSMLTTP
VTTDQQIKLDTDKSYSKVVKKRGLHAKGQRLPSSTSKSKITVKLPISSSSRQRHHVTQ
Nucleotide sequence
Length: 2,456
>KH2012:KH.C1.488.v1.A.SL1-1
ATGCTGTTAATAGTGTATTAGGCAATTAAAATTTGTCCAATCTACCCACAGCAGAATGAA
CTGTGCTGTGGAGCCTGATCTTGAGAGAGATGAACTACAAATAGATGTATCCGTATCTGG
AGAATCTGTCGTGTCCTTTCAAGATGGACAAGAAGTTCAGTTGGATGATGGAAGCACAGC
TTTAATATTTCATCAAGCAAAAGATTCATATCCTTTAGAGCTTGGACAACCAATTCAACT
CGAAAATGGTTCGACAGCCTATTTGTATCACACGAAAGCAAACACAGTGAATGATGTGGA
GCAAACTTCAGAGGAAAACAAAACTGAAGGAGAAGAAGAAGTTGACATGCAACTTACTGA
TGTTAGCTGGGTCTCATCAAGTAGCACAGAATCTAAGGTATTCAAGTGCGACTTCGGTAC
CTGCAACAAAGTATATACCACTGCTCACCATTTAAAAGTTCATAAGAGAGTCCACACTGG
TGAGAAGCCATACAAATGCAATTGGAAAAACTGTGAAAAAGTTTTTATGACAAGTTACTC
TCTAAAGTCACACCATAGAGTGCACACTGGAGAGAAGCCATACCCATGCCCTCACACTTC
GTGCTCCAAAGCTTTCAAAACTGCTGGTGATCTTCAGAAACATATTCGCACACATACTGG
TGAGAAGCCGTTCAAATGTCCATTCGAAGGATGTGAAAAGGCATTCACAACATCAAATAT
TTGTAAAGTTCACATCCGAACTCACACTGGTGAACGACCTTATACTTGCCCTTACGAAGA
TTGTAAGAAATCATTCTCCAACATCACCAACTATAGAAATCATACACGAATCCACACAGG
TGAGAAACCATATGTTTGCGCTGTGGGAAACTGCAAGAAACAATTCACTGAATATTCTTC
ACTTTATAAACATCAGATTGTTCATTCGATCGCGAAACCTTATGCTTGTCACTACTGTGG
TAAATTGTACAGACAAACCAGCACACTTGTCATTCATAAACGTAAAGTACACAAAGATGA
CTCCGGTGTTACTGAGGAAGATTTCGTGCAAATTCCAAACAACATTGGAAAAGAAGGTTC
GGCAAAAAGTTATGAAAACACAAGAATGGATCATATGCATAGCATGAACAATGCTAATAA
CAAAGTAGAATCGCCGGTTGCATCAGTGGTTGTTCTTCCAATGAACAATACACAGAATCC
CGTCATAATAAACCCATCAACACCAACCCAGTCACAGTTACCAACTTCCATTACAACGAT
GTCATCGAATAATACCAACCGTGACCAGCAACTAGTTGTCACTTTGAATGATAACGTGAC
ACTTGCTACTGCAGCTTCGGACAAAGTAACGAATCAGTTTTTACAGGATTTTGCTTCAAA
TAAAAAGGACGAAGGGGAGCTTTTCATAAGTGAAGACCCCGATAATGTAGCTGTGGATAT
TTCATCTAATGCTGGGATATCTGAAGCTGCAACAAGTTCATTTAACTCGGATATTTGGGT
CAATTATTCAACTGAAAATCAAGATATAAATAAACAGGTTGAAGAAGACCAGTATTCAGT
GGCAACATTAGTGATCGATGGTACAAACTACCTCGTGCAAGTTGTAAATGAACCTGACCA
ATCACAATGCTCCGTTGATCAGGAAAGCATAGTAAATGCTCTCACGTCATCAGTGCTCAC
TACACCACTTGGTGGCAGCAAAGGTCCAGATGTAGAACTCCCTCTTGTGGGCAACTTAAT
CTTGCACACGCAACCCTCCGGCGAAATTTCGACTGGAAATGATATTTCTATCGACTTGAA
CTCTAGCACCACCTCGTGTGCAACAGGCAGTCGTTTAATCTCGGACATGATACAGGATGT
TTCACAAATAAATTCACAATGCGATGTGAACTTCCAACAAGCCACCACCACGTTCTTGTG
CAATCAACCAACCAACCCTATATTAACTTTTACAAATCAGAATTCTGTGACATCATCAAT
GTTAACGACTCCAGTAACAACAGACCAACAAATCAAGTTAGATACTGACAAGAGTTATTC
CAAAGTTGTGAAAAAGAGAGGTTTACATGCCAAAGGTCAAAGACTTCCCTCTTCAACATC
AAAATCGAAGATCACGGTTAAACTACCAATTTCTAGTTCATCTCGGCAGCGCCATCATGT
GACTCAATAATTATAATAGCTGAATATAATGACTTACTGATCGTGAATACACATCAATTT
TCCTCGTCTTCAAGTGTGTTTTTTAGTTGTTTAAACATTTTTTTATTTAATACCACGCTA
ACTATCGTAGCAAGATGGTGTCAAATATTTTTGAATATAAGACATCTGTAAGCTCACGAT
AAGTTTTTGTAACCATTAGGAAAATGCTGAAGTGTCGAGATATTTCACCATAACACAATT
GGTGTTGATATTTATTATGCTTCTCGTAACACAAACTATTGACATAACACATAACG
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[128-184] 3.97E-12 - T[170-229] 1.44E-18 - T[230-288] 1.19E-17 - T[274-328] 2.32E-13 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[130-159] 15.438 - T[160-189] 15.958 - T[190-219] 16.124 - T[220-249] 14.253 - T[250-279] 15.563 - T[280-309] 12.778 - T[310-338] 11.946 |
| SMART |
Znf_C2H2_type (IPR013087) - T[130-154] 0.0093 - T[160-184] 0.0021 - T[190-214] 9.6E-5 - T[220-244] 0.0054 - T[250-274] 2.9E-4 - T[280-304] 0.042 - T[310-333] 0.074 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[132-154] . - T[162-184] . - T[192-214] . - T[222-244] . - T[252-274] . - T[282-304] . - T[312-333] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN143_HUMAN | 49.176 % | 369 | 9.56E-119 |
| ZNF76_HUMAN | 53.211 % | 366 | 3.39E-118 |
| ZN554_HUMAN | 46.117 % | 185 | 9.48E-51 |