- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Region 'REG00001092' >
- Transcript 'KH2012:KH.C12.208.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.208.v1.C.SL2-1
Possible name(s)
POLR1C; POLR2C
Gene model
Location
KhC12 [328,995 / 330,416]
Amino acid sequence
Length: 351
>KH.C12.208.v1.C.SL2-1
LDSDIAMDIIKDIRSNIRLNEHGIANTHTTTYPRSYAGFNDAWDFQKFADNFCINVIELG
PDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRLGLIPLTA
DAKLFEYRQGDDADGTPEDTLEFELNIKCTKNLSAPKDTTDLDVLYKHHKVYSKDIKWIP
LGNQKDLLTVKPVYDDILVAKLRPGHILDVKLHAVKGVGQDHAKFSPVATASYRLLPQIR
LLDQILNSDAEDLQRCFAPGVIEVYRNKNGDQEARVVDARKDTCSREVLRHPHLKDRVEL
SKVRDHFIYSIESSVAITPNELMCRAIKIMMGKCRTLLQELEKSEQDLDNA
Nucleotide sequence
Length: 1,421
>KH2012:KH.C12.208.v1.C.SL2-1
TTGTGAACAAAATATAAACTGAATACAAATTGTACAGGTTAACTAGATTCAGATATAGCT
ATGGATATTATAAAAGACATAAGGTCGAATATTCGTCTAAACGAACATGGCATTGCAAAC
ACACACACGACAACTTATCCACGATCTTACGCTGGTTTCAACGATGCATGGGATTTTCAA
AAATTCGCCGACAATTTTTGCATCAATGTAATCGAACTCGGTCCAGATTCCATGCAGTTT
GACATGCTTGGTGTTGATGCGGCAATCGCCAATGCGTTCCGTCGAATACTGATTGCCGAA
GTCCCAACAATGGCTATTGAGAAAGTATATATTTACAACAATACAACGGTGATACAAGAT
GAAGTGCTCGCCCATAGGTTAGGTCTTATACCACTGACTGCAGACGCAAAACTATTTGAA
TATCGGCAAGGTGATGACGCTGATGGGACACCTGAAGACACTCTGGAATTTGAATTGAAT
ATAAAATGCACGAAAAACTTGTCAGCGCCCAAAGATACAACAGATTTAGATGTATTGTAT
AAACACCATAAGGTTTATTCTAAAGATATTAAATGGATTCCTCTGGGCAATCAGAAGGAC
TTGCTTACAGTAAAGCCAGTTTATGATGATATTCTTGTTGCTAAATTAAGGCCAGGTCAC
ATTCTTGATGTAAAACTACACGCAGTAAAAGGTGTGGGCCAAGATCACGCCAAGTTTTCA
CCGGTTGCGACCGCTTCATATCGCCTGCTCCCACAAATCAGACTTCTTGATCAAATCCTT
AACTCAGATGCGGAAGATCTCCAAAGATGTTTTGCTCCCGGAGTGATTGAGGTTTATCGG
AATAAAAATGGTGATCAAGAAGCTAGAGTGGTTGATGCTAGAAAAGATACTTGCAGTCGG
GAAGTGTTGAGACATCCTCACTTAAAAGATAGAGTAGAACTGAGCAAAGTACGCGATCAT
TTCATTTATTCAATTGAATCTTCTGTCGCTATTACTCCAAATGAACTGATGTGCCGAGCC
ATTAAAATCATGATGGGAAAATGTAGAACTCTGCTGCAAGAACTTGAAAAGAGTGAACAG
GACTTGGATAATGCATAACTTTTTATGAAGCTGCATAACACTTTTAGAAAACAGCAATAT
TTAAAAGAAAATTCTGAATTTGGAGATTGAATTCAAAATTGGTATAATTTAGATAAATTG
TAAAATAAATGCACAGAACAGTTATTGATAATTACTATTAACTATTACCCTAATAAGTGC
TGATACATTTGCTGGAAAATTCGTGCCAAATAAGTTATGTGCAACGTGTGCTTTTTCAAA
TTTTGTGCTAGATGATGCACTATTAACAAAATCTGTGCTCAATTATGTTCTGTTCATCAC
GATGATGTTTCACCAACAATCATAAACAACTTTCCTTCTAG
| PANTHER |
RNAPI/II_AC40 (IPR033901) - T[9-345] 1.4E-137 |
| SUPERFAMILY |
RBP11-like (IPR036603) - T[51-93] 3.92E-31 - T[257-345] 3.92E-31 |
| CDD |
RNAPI/II_AC40 (IPR033901) - T[52-340] 2.54884E-175 |
| SMART |
DNA-dir_RNA_pol_RpoA/D/Rpb3 (IPR011263) - T[63-340] 2.4E-97 |
| Pfam |
DNA-dir_RNA_pol_RpoA/D/Rpb3 (IPR011263) - T[65-334] 1.4E-19 |
| ProSitePatterns |
DNA-dir_RNA_pol_30-40kDasu_CS (IPR001514) - T[77-117] . |
| SUPERFAMILY |
RNApol_insert_sf (IPR036643) - T[88-227] 1.67E-35 |
| Gene3D |
RNApol_insert_sf (IPR036643) - T[89-223] 1.1E-110 |
| Pfam |
DNA-dir_RNA_pol_insert (IPR011262) - T[95-226] 4.5E-29 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPAC1_HUMAN | 54.493 % | 407 | 1.1E-142 |
| RPB3_HUMAN | 34.359 % | 108 | 2.37E-27 |