Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.1278.v1.A.nonSL3-1

Possible name(s)

NSMCE1

Gene model

KH2012:KH.C1.1278

Location

KhC1 [4,766,384 / 4,767,955]

Sequences

Amino acid sequence

Length: 279

>KH.C1.1278.v1.A.nonSL3-1
FSSKLIRKYCAMSAYKKCHIYFLQSIMNKTILSESECQQIRQESYQVSEVTPEGNLLDFL
QVINDQLHPFHFKIRQSKREDTGETVYVLISLVDNDLNRLVVGGDFARAELEYFKKILEI
IIVMSDTQNVGTASSIDILNLADSCSPRMSKTEAKRLLTRFVDERWFYDNEGIISLSPRC
ILELEQYLSQCFDSFVSVCTMCSNTVFQAQVCSNCSARMHHHCARTYSKRKTTSLKCLSC
NHPFPHLQSEDNGVTGESTSFHTENTSESSRKKKRTHAH

Nucleotide sequence

Length: 1,571

>KH2012:KH.C1.1278.v1.A.nonSL3-1
CTTTCCCTTTTGTCATTTCGACGGATAACATGTAATAAATCACAGTTTACTGGCGGGAAA
TTATAACAACACAGTAGTAATGTTTTGATAGAAAGTTTGATTTTCCTCCAAATTAATACG
CAAATATTGTGCAATGAGCGCGTATAAAAAATGTCACATCTATTTTTTACAATCAATAAT
GAACAAAACAATATTAAGTGAAAGCGAATGTCAGCAAATTCGTCAGGAAAGTTACCAAGT
TTCTGAAGTAACGCCAGAGGGAAATCTTTTGGATTTTCTACAAGTTATTAATGACCAACT
TCATCCGTTTCATTTTAAAATTCGCCAAAGCAAGCGTGAAGACACTGGAGAAACAGTTTA
CGTTTTAATAAGTTTGGTGGACAATGACCTTAACCGTTTAGTCGTCGGTGGCGATTTCGC
GCGCGCTGAACTGGAATATTTTAAGAAAATCCTGGAAATCATAATTGTCATGTCAGATAC
ACAAAACGTGGGGACTGCGTCTTCAATTGATATTTTAAATTTGGCTGATTCTTGTTCACC
GAGAATGAGCAAAACTGAAGCCAAGAGGTTGCTCACACGGTTTGTGGATGAGCGGTGGTT
TTACGACAACGAAGGAATCATCTCTTTATCTCCACGTTGTATTCTCGAACTAGAGCAGTA
TCTATCTCAGTGCTTCGACAGTTTTGTGTCAGTATGCACAATGTGTTCAAACACTGTTTT
TCAAGCTCAAGTTTGCTCGAATTGTTCTGCGCGTATGCATCACCACTGTGCAAGAACGTA
CAGCAAAAGAAAAACCACTTCTCTAAAATGTCTTTCTTGCAATCATCCATTTCCACACCT
TCAGTCAGAAGATAATGGTGTCACAGGGGAAAGTACCTCTTTTCATACTGAAAATACTTC
AGAATCATCACGAAAAAAGAAAAGAACCCATGCTCACTGATTTTCGTTTTAAAGTAGAAC
TTATGCTGTGTCTTAACAATACACACAAAAATCGGGAGCATGGCGAGCTTCATTAGTATA
AAACAATGTTCATGGTTAGTAACACCTGCTAGTCATGTTCATGTGTAATATTGTTCTTCC
GTATTTTAGAGACGCCCAATCTTTTCCCCGAATTTGTTACATCAAAATGTCTCCAAATAA
CTGAAAGGCTTAGTTGCAATGTTTTAATGTCATTTTAAAACTAGCCTACATTTAAACAAA
AAATACTAAAACATACTTGCCTAATTAGAATGTTGTTTTTGGTGCTTTTTGCTGTTTATG
TACTTTTTTTCTATGATTATAACAGTAAAGACACATGTTGCTTACTTGAATTAAAATCTT
TTGTTTTGTATTCAAAGTATAAATTTCAAGATGTTTTGATAAAAATTACTCAAATTTATA
TTAAAACACACAAAATCAAGTGTATACATATGCATACAGTTAATTGTATATGTAATCCAT
CAGCAGTACACTACAATTGTAGTTGACTGTGTACAGGCTGTTTTCTATTTGTACATTGTG
CACATTGTGGTCTGAGAAATATTTTTAAACAATTTCATTTCTAACAATTTCTTCTTTTCA
ATTTTCCAAAG

InterProScan

PANTHER	Nse1 (IPR011513) - T[11-270] 1.0E-64
Pfam	Nse1 (IPR011513) - T[21-184] 1.2E-21
Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[101-195] 9.7E-26
Gene3D	Znf_RING/FYVE/PHD (IPR013083) - T[197-252] 1.5E-10
Pfam	Znf_RING-like (IPR014857) - T[199-240] 3.8E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NSE1_HUMAN	33.333 %	142	6.88E-41