- Transcript 'KH2012:KH.C1.1086.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1086.v1.R.ND1-1
Possible name(s)
TDRD1; TDRD15; TDRD6
Gene model
Location
KhC1 [5,105,033 / 5,108,555]
Amino acid sequence
Length: 973
>KH.C1.1086.v1.R.ND1-1
VFNMDDWNPQEEAFQNKRFNSGNGGKKREKYTLYVVGIPPELSNRALSNLFSSYGQVLHA
NVLPQKHDGLPRAGFVDFNSSSEAELAIRKLNGTRIGRFNLKVEHARPRSTNSNGGTGYM
DLIKKLEKAPLIESDLNMLVQSVEERISKNPLHSAGGDAGILTEKVKQTTSHVESDNEDG
KPIKKYCENNNYLETVPQKHCNVCGKVASKLCSSCSSVYYCSVNCQKQDWLDGHKMQCKQ
VKIVNDKESKEVGNDEPLIVVNDSILKSFEKHINSNVSKVVTAVKPSTSCEENKVITQHV
VESVSCDLEVEQVPPESKSQFTDFSNIMVDSTLDLTVCDLDIANSAILCKSSNVEAEKTL
DCLQEQINKYYCKNEVGKLENFRVGVLCAAVFVEDNQWYRAVIEKVNSQSGKAFVRFIDY
GNTQIMMRNALKILKEEFTTLPAFCLTCLLFTPGVYSGWQPEAKTFLSEVLQKNGICIKF
TVKEIVNRYRYVGEIKSDDLSLNKEFLERGFVKKRLHEAQKPEFDKPHSSSLPSENQDVS
QSKSTGTVEMKKVLPNPSRRPTQSSVSLSPSNLMKHQVTKTALHIKEVETPEQQFQLLIS
HVNNPCDFYCQIVQQSLADLSNYLQEMTAYFTTQNASNSWNIDVGTICAAQFTEDKMWYR
AVVLNKDEKIQVRFVDYGNTEEVSKAQVRPLPEQFQSLQIQSFHACLAHSFPIDGQEWSQ
ESINLMKKCQNHPFVAKVHEKTRGLSSLTIYIDDNLTLNDHLVQAGFASSAPPKVETSAV
KILYTDKLPVVVPPLQSSKPVSINITEVSLDGHLYCQLISDDLLGVSECTTKLTKHCNNF
KSLLSTPEVGKVCSAYYEKDKCWYRAQITNLTEGKAEVVYLDYGNSLKVPMEQLQNLPEE
FASPSAQAIKIRLADCTFPTNGCSEEMLCLIQKLMNCPLDAKFLSVKGQAEYSVKIPELL
NLLICHKFVKYTF
Nucleotide sequence
Length: 3,522
>KH2012:KH.C1.1086.v1.R.ND1-1
AAGTTTTGTAAAGTAGATAATCTAATTACACTGTATTGATAAGTATTCAACATGGATGAT
TGGAATCCACAAGAAGAAGCTTTTCAAAACAAAAGATTTAACTCTGGAAATGGTGGGAAG
AAGCGAGAGAAATACACGCTTTATGTAGTAGGAATTCCCCCTGAACTAAGCAATCGAGCA
CTGAGTAATTTGTTCAGCTCCTATGGACAAGTACTGCATGCAAATGTTCTTCCACAAAAG
CATGATGGTTTGCCAAGGGCTGGGTTTGTTGACTTCAACTCATCATCAGAAGCTGAACTT
GCAATTAGAAAGCTTAATGGCACTCGAATTGGTAGATTTAATCTGAAAGTGGAACATGCA
CGTCCAAGGTCAACTAATAGCAATGGTGGCACTGGCTACATGGATTTGATAAAGAAACTT
GAAAAGGCTCCTTTGATTGAAAGTGACCTGAATATGTTGGTTCAATCTGTTGAAGAAAGA
ATATCAAAGAATCCTTTACATAGTGCGGGGGGTGATGCTGGGATTTTAACGGAAAAAGTA
AAACAAACAACAAGTCATGTTGAAAGTGACAATGAAGATGGAAAACCTATCAAGAAATAT
TGTGAAAACAACAATTATTTAGAAACTGTTCCACAAAAACATTGTAATGTTTGTGGAAAG
GTGGCAAGCAAACTTTGTAGCTCTTGCTCATCGGTGTATTATTGCTCTGTGAATTGCCAA
AAACAAGATTGGTTGGATGGTCACAAGATGCAATGCAAGCAAGTGAAGATAGTAAATGAT
AAAGAAAGCAAAGAAGTTGGAAATGATGAACCATTGATAGTGGTTAACGATTCTATTTTA
AAAAGTTTTGAAAAACATATAAACTCAAATGTAAGTAAGGTTGTAACTGCAGTTAAACCT
TCTACATCTTGTGAAGAGAATAAAGTAATTACTCAACATGTGGTGGAAAGTGTAAGCTGT
GATCTAGAAGTTGAGCAAGTGCCTCCAGAAAGTAAAAGTCAGTTCACAGACTTCAGCAAC
ATTATGGTTGATTCTACATTAGATCTTACAGTTTGTGACTTGGATATTGCTAACAGCGCC
ATTCTGTGCAAAAGCAGTAACGTTGAAGCTGAAAAAACATTGGATTGTTTACAAGAACAA
ATTAACAAGTACTATTGTAAAAACGAAGTTGGGAAGTTGGAAAACTTCCGTGTTGGTGTA
CTGTGTGCTGCAGTATTTGTGGAAGACAACCAATGGTATAGAGCTGTAATTGAAAAAGTA
AATTCTCAATCTGGAAAGGCTTTTGTAAGATTTATTGATTATGGAAACACACAAATCATG
ATGAGAAATGCATTAAAGATTTTAAAGGAAGAATTTACAACATTGCCGGCTTTTTGTTTG
ACCTGCTTACTTTTCACTCCTGGTGTTTATTCTGGTTGGCAACCTGAAGCTAAGACATTT
CTATCGGAAGTTTTGCAAAAGAATGGTATTTGTATAAAGTTTACTGTAAAGGAAATTGTC
AACAGGTACAGATATGTTGGTGAAATCAAAAGTGATGATCTAAGTCTTAACAAAGAGTTT
CTCGAGAGAGGGTTTGTAAAGAAGAGGTTACATGAAGCACAAAAGCCAGAATTTGACAAG
CCACACTCTTCAAGTTTGCCATCGGAGAACCAAGATGTGTCACAAAGTAAATCAACAGGA
ACTGTTGAGATGAAGAAAGTTTTACCAAATCCAAGTCGCCGACCAACACAAAGTTCAGTT
TCACTATCTCCCAGCAACTTGATGAAACATCAAGTTACAAAGACTGCACTACATATCAAG
GAGGTTGAAACACCAGAGCAGCAGTTTCAGTTACTTATATCTCATGTAAATAACCCATGT
GACTTTTATTGTCAGATTGTGCAGCAAAGTTTGGCAGATTTGTCAAATTATTTACAAGAA
ATGACAGCTTATTTTACCACACAAAATGCATCTAACAGCTGGAACATTGATGTCGGCACA
ATTTGTGCAGCTCAGTTTACGGAGGACAAGATGTGGTATAGAGCTGTTGTGTTAAATAAA
GATGAGAAAATCCAAGTACGATTTGTGGATTATGGAAACACAGAAGAGGTTTCAAAGGCA
CAAGTTCGACCATTACCTGAGCAGTTTCAATCACTCCAAATACAATCATTCCATGCCTGT
CTTGCTCATTCCTTCCCAATTGATGGTCAAGAATGGAGCCAAGAATCAATTAATCTTATG
AAAAAATGCCAGAATCACCCCTTTGTTGCTAAAGTTCATGAAAAAACACGAGGTCTATCA
TCTCTTACTATTTATATTGACGATAACTTAACATTGAATGATCACCTGGTACAAGCTGGC
TTTGCATCATCTGCTCCACCAAAGGTTGAAACTTCAGCGGTTAAAATACTTTACACTGAT
AAACTACCTGTTGTCGTCCCACCACTACAAAGTTCTAAGCCAGTTTCTATCAATATTACA
GAAGTTTCTCTGGATGGTCATTTATACTGTCAGCTCATTTCAGATGATTTGCTTGGTGTC
TCCGAATGCACAACAAAGCTGACAAAACATTGTAATAATTTTAAATCTTTATTATCCACA
CCAGAAGTTGGTAAAGTATGCTCGGCATATTATGAAAAGGATAAATGTTGGTATCGAGCT
CAAATCACCAACCTCACTGAAGGCAAAGCAGAGGTTGTGTATCTGGATTATGGAAATTCT
TTGAAAGTTCCAATGGAACAACTTCAAAACTTGCCCGAAGAATTTGCATCTCCATCAGCT
CAAGCTATCAAGATACGCTTGGCTGACTGCACATTCCCGACAAATGGATGTTCCGAAGAA
ATGCTTTGTTTGATTCAGAAACTGATGAACTGTCCATTGGATGCAAAGTTCCTCAGTGTA
AAAGGCCAAGCAGAATATTCTGTTAAAATACCAGAACTACTGAATCTTCTTATTTGCCAC
AAATTTGTTAAATATACTTTTTAAGTAAATGTGACTAACTGTTACTACCAGTAAGGTTGT
AAGTCATAACTTTGCATATTTAGTAATCCATAAACATAATTTCAAGAATAGTTTTTTGTT
AATGTAAGAAATAACATTAAGTTAATAATTTTCAATTAATTTAACCTTTTTATTCACTTG
TGGTTACTTTTTACATAAAACTTTCGAATCCATTTTTGAGGTTCTCTAAGTTAAATGTTC
CAATAAGTTTTGTCAATTGTGCTTTTAGTTTTTATGATAAATCATGTTGTTGCCATTTTT
TTATAACAATAGTGGCATAGTGCATCTTATATATTAAGAATTTTCAGTTAATATATAATT
GTATAATGTAACAGTAAAGATAATGTCCATAAAGTAACCCATACATTTTTCTGAATTTGA
AAGTGTATATATTTTTTGTAACCTGTAAACCTGTAGAATTTGCATATTTGAAAAAGTGGT
TTCTGGTTGAAATGATGTCTTGTTTTCCAAACACGTTCCACCTCTTGGTGCAAACACTTC
CATTCCGTTCTTAGTTTTCAATCTTCATTAAAATTTCGTTTT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[5-121] 5.0E-18 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[23-118] 1.33E-19 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[31-108] 15.016 |
| SMART |
RRM_dom (IPR000504) - T[32-104] 4.2E-13 |
| Pfam |
RRM_dom (IPR000504) - T[33-101] 8.0E-13 |
| Pfam |
Znf_MYND (IPR002893) - T[201-238] 9.2E-11 |
| ProSiteProfiles |
Znf_MYND (IPR002893) - T[201-238] 11.793 |
| Pfam |
Tudor (IPR002999) - T[329-450] 3.4E-20 - T[592-709] 1.5E-28 - T[799-914] 8.0E-25 |
| Gene3D |
SNase_OB-fold_sf (IPR035437) - T[353-353] 3.9E-24 - T[446-518] 3.9E-24 - T[598-625] 3.7E-40 - T[695-768] 3.7E-40 - T[805-831] 6.7E-26 - T[901-946] 6.7E-26 |
| SMART |
Tudor (IPR002999) - T[380-439] 1.9E-16 - T[640-696] 6.3E-14 - T[845-902] 2.5E-17 |
| ProSiteProfiles |
Tudor (IPR002999) - T[381-441] 19.066 - T[641-698] 18.844 - T[846-904] 18.864 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TDRD1_HUMAN | 26.943 % | 169 | 6.71E-43 |
| TDRD6_HUMAN | 23.372 % | 89 | 8.27E-18 |
| TDR15_HUMAN | 25.413 % | 100 | 1.81E-21 |
