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TRANSCRIPT CARD

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  1. Region 'REG00000051' > 
  2. Transcript 'Cisavi.CG.ENS81.R67....' > 
  3. Transcript 'Cisavi.CG.ENS81.R9.3...' > 
  4. Transcript 'KH2012:KH.L116.82.v1...' > 
  5. Transcript 'KH2012:KH.S988.2.v2....'

Transcript Model

Transcript Id

KH2012:KH.S988.2.v2.A.SL6-1

Possible name(s)

GPS1; PSMD6

Gene model

KH2012:KH.S988.2

Location

KhS988 [8,982 / 12,110]

Sequences

Amino acid sequence

Length: 395

>KH.S988.2.v2.A.SL6-1
FNFVGKLNLKMPIENLEEEGLAKIPNLEIAQLEFQLTLDPLNAKVKDELLAFIKKDNMSP
YYEKVCKAFGFKLDEGLLEKMKNENTKELSKLDEKISEEVEYESDEKDALLSKAEFLCKI
GEKEGCLTVFRKAYDKTIALGHRLDIIFNLIRVGLFYLDHDLITRNIDKAKQLIDEGGDW
DRRNRLKVYQGLYSVAIRDFKSAAKLFLDTVSTFTSYELMDYQTFVTYTVYVCMLALDRS
QLREKVVKGSEILEVLFEEEATKEFLFSLYDCRYGKFFVRLAEVESRMKNDRFFHAHYRY
YVREMRVMAYTQLLESYRSLTLEYMANAFGVTVEFIDNELSRFIAVGRLHCKIDKVGGVV
ETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINI

Nucleotide sequence

Length: 1,505

>KH2012:KH.S988.2.v2.A.SL6-1
ATTTTAACTTTGTTGGTAAATTAAACTTGAAAATGCCGATTGAAAACTTAGAAGAGGAAG
GCTTGGCGAAAATCCCGAATCTTGAAATTGCTCAACTCGAGTTCCAGCTAACTTTGGATC
CGTTGAACGCGAAAGTTAAAGATGAGTTGCTCGCTTTTATCAAGAAAGACAACATGTCAC
CTTACTATGAGAAAGTTTGCAAAGCTTTTGGATTTAAGTTGGATGAGGGTTTGTTGGAAA
AGATGAAAAATGAAAACACAAAAGAACTTTCGAAACTTGACGAGAAAATCTCTGAGGAAG
TTGAATACGAGTCCGATGAAAAAGACGCGTTGTTGTCGAAAGCAGAATTCCTTTGCAAGA
TTGGGGAGAAGGAAGGATGTTTAACAGTGTTCCGTAAAGCTTACGATAAAACGATCGCGT
TGGGCCATCGTCTCGATATTATTTTCAATCTTATTCGCGTTGGTTTGTTTTATTTGGACC
ATGATTTAATTACAAGGAATATTGATAAAGCTAAACAGTTGATTGACGAGGGGGGCGATT
GGGATCGAAGGAACCGGTTGAAAGTTTACCAAGGATTGTATTCGGTTGCCATCAGGGATT
TCAAATCTGCCGCAAAGTTGTTCCTTGATACGGTATCTACGTTCACGTCGTATGAGTTAA
TGGATTATCAAACATTCGTTACTTATACTGTGTATGTTTGCATGCTGGCGTTGGATCGCT
CCCAACTACGAGAGAAGGTTGTTAAGGGATCGGAAATACTTGAGGTTTTATTCGAGGAAG
AAGCAACGAAAGAATTCTTGTTTTCGCTTTACGATTGTCGATACGGAAAGTTCTTCGTTA
GATTAGCTGAAGTTGAAAGTCGGATGAAGAACGATCGTTTCTTCCACGCGCATTATCGAT
ATTATGTTCGTGAGATGCGTGTCATGGCTTACACACAACTCCTTGAGTCATATCGCAGTT
TAACATTGGAATATATGGCTAATGCATTCGGGGTAACGGTGGAATTTATTGACAACGAAC
TTTCCCGTTTCATTGCGGTTGGTCGTCTGCATTGCAAGATCGACAAAGTTGGCGGAGTTG
TTGAAACCAATCGTCCCGACAGCAAGAATTGGCAGTACCAAGAAACGATCAAGAAAGGGG
ACTTGTTGTTGAACCGGGTGCAAAAGTTGTCGCGTGTTATCAATATTTAGGTTGAAAGTA
AAATGTCAACTTTATTTGGATTCTTGTTGTTGTGATATTACATGTTAAGATTGGTTACCA
TGGAAACCCAACCATTGGGTCAAAGTTCATGAAGTTGTTTTTATAATTCTGCTGACGTGT
CTCTTTACCCCATAGTAAACCGATGTAGCATGCGTCACTAAGGATCGTAATACATTATGT
TGGTTGGGGATGCGGGGGGTAGAATTTGTGCAAAAGTTGGTGAATGTTCATTGTTGGGCA
ATAACGTAACCGAAATTGGTTGATGACGTCATAATCAATATGATTGTAAACCCGCAATCG
CGTCG

InterProScan

PANTHER
PSMD6 (IPR035268) - T[17-395] 4.6E-175
Pfam
Rpn7/CSN1 (IPR019585) - T[74-245] 3.9E-53
Pfam
PCI_dom (IPR000717) - T[262-363] 1.4E-15
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[290-372] 7.0E-19
SMART
PCI_dom (IPR000717) - T[296-379] 6.1E-22

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CSN1_HUMAN 22.593 % 85.5 4.64E-18
PSMD6_HUMAN 70.18 % 560 0