Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.S988.2.v2.A.nonSL3-1

Possible name(s)

GPS1; PSMD6

Gene model

KH2012:KH.S988.2

Location

KhS988 [8,982 / 12,154]

Sequences

Amino acid sequence

Length: 397

>KH.S988.2.v2.A.nonSL3-1
QDFNFVGKLNLKMPIENLEEEGLAKIPNLEIAQLEFQLTLDPLNAKVKDELLAFIKKDNM
SPYYEKVCKAFGFKLDEGLLEKMKNENTKELSKLDEKISEEVEYESDEKDALLSKAEFLC
KIGEKEGCLTVFRKAYDKTIALGHRLDIIFNLIRVGLFYLDHDLITRNIDKAKQLIDEGG
DWDRRNRLKVYQGLYSVAIRDFKSAAKLFLDTVSTFTSYELMDYQTFVTYTVYVCMLALD
RSQLREKVVKGSEILEVLFEEEATKEFLFSLYDCRYGKFFVRLAEVESRMKNDRFFHAHY
RYYVREMRVMAYTQLLESYRSLTLEYMANAFGVTVEFIDNELSRFIAVGRLHCKIDKVGG
VVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINI

Nucleotide sequence

Length: 1,549

>KH2012:KH.S988.2.v2.A.nonSL3-1
AACTTATTGTTGTCGAGCCTTGGATTCTATTTCATATTAACAAGATTTTAACTTTGTTGG
TAAATTAAACTTGAAAATGCCGATTGAAAACTTAGAAGAGGAAGGCTTGGCGAAAATCCC
GAATCTTGAAATTGCTCAACTCGAGTTCCAGCTAACTTTGGATCCGTTGAACGCGAAAGT
TAAAGATGAGTTGCTCGCTTTTATCAAGAAAGACAACATGTCACCTTACTATGAGAAAGT
TTGCAAAGCTTTTGGATTTAAGTTGGATGAGGGTTTGTTGGAAAAGATGAAAAATGAAAA
CACAAAAGAACTTTCGAAACTTGACGAGAAAATCTCTGAGGAAGTTGAATACGAGTCCGA
TGAAAAAGACGCGTTGTTGTCGAAAGCAGAATTCCTTTGCAAGATTGGGGAGAAGGAAGG
ATGTTTAACAGTGTTCCGTAAAGCTTACGATAAAACGATCGCGTTGGGCCATCGTCTCGA
TATTATTTTCAATCTTATTCGCGTTGGTTTGTTTTATTTGGACCATGATTTAATTACAAG
GAATATTGATAAAGCTAAACAGTTGATTGACGAGGGGGGCGATTGGGATCGAAGGAACCG
GTTGAAAGTTTACCAAGGATTGTATTCGGTTGCCATCAGGGATTTCAAATCTGCCGCAAA
GTTGTTCCTTGATACGGTATCTACGTTCACGTCGTATGAGTTAATGGATTATCAAACATT
CGTTACTTATACTGTGTATGTTTGCATGCTGGCGTTGGATCGCTCCCAACTACGAGAGAA
GGTTGTTAAGGGATCGGAAATACTTGAGGTTTTATTCGAGGAAGAAGCAACGAAAGAATT
CTTGTTTTCGCTTTACGATTGTCGATACGGAAAGTTCTTCGTTAGATTAGCTGAAGTTGA
AAGTCGGATGAAGAACGATCGTTTCTTCCACGCGCATTATCGATATTATGTTCGTGAGAT
GCGTGTCATGGCTTACACACAACTCCTTGAGTCATATCGCAGTTTAACATTGGAATATAT
GGCTAATGCATTCGGGGTAACGGTGGAATTTATTGACAACGAACTTTCCCGTTTCATTGC
GGTTGGTCGTCTGCATTGCAAGATCGACAAAGTTGGCGGAGTTGTTGAAACCAATCGTCC
CGACAGCAAGAATTGGCAGTACCAAGAAACGATCAAGAAAGGGGACTTGTTGTTGAACCG
GGTGCAAAAGTTGTCGCGTGTTATCAATATTTAGGTTGAAAGTAAAATGTCAACTTTATT
TGGATTCTTGTTGTTGTGATATTACATGTTAAGATTGGTTACCATGGAAACCCAACCATT
GGGTCAAAGTTCATGAAGTTGTTTTTATAATTCTGCTGACGTGTCTCTTTACCCCATAGT
AAACCGATGTAGCATGCGTCACTAAGGATCGTAATACATTATGTTGGTTGGGGATGCGGG
GGGTAGAATTTGTGCAAAAGTTGGTGAATGTTCATTGTTGGGCAATAACGTAACCGAAAT
TGGTTGATGACGTCATAATCAATATGATTGTAAACCCGCAATCGCGTCG

InterProScan

PANTHER	PSMD6 (IPR035268) - T[19-397] 4.7E-175
Pfam	Rpn7/CSN1 (IPR019585) - T[76-247] 3.9E-53
Pfam	PCI_dom (IPR000717) - T[264-365] 1.4E-15
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[292-374] 7.0E-19
SMART	PCI_dom (IPR000717) - T[298-381] 6.1E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CSN1_HUMAN	22.593 %	85.9	3.77E-18
PSMD6_HUMAN	70.18 %	560	0