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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C1.426.v1....' > 
  2. Clone 'AHC0AAA193YE10' > 
  3. Transcript 'KH2012:KH.C6.140.v2....' > 
  4. Transcript 'KH2012:KH.C6.140.v1....' > 
  5. Transcript 'KH2012:KH.S988.2.v1....'

Transcript Model

Transcript Id

KH2012:KH.S988.2.v1.R.ND2-1

Possible name(s)

GPS1; PSMD6

Gene model

KH2012:KH.S988.2

Location

KhS988 [8,982 / 12,164]

Sequences

Amino acid sequence

Length: 233

>KH.S988.2.v1.R.ND2-1
WNFLCKKKSPLIDEGGDWDRRNRLKVYQGLYSVAIRDFKSAAKLFLDTVSTFTSYELMDY
QTFVTYTVYVCMLALDRSQLREKVVKGSEILEVLFEEEATKEFLFSLYDCRYGKFFVRLA
EVESRMKNDRFFHAHYRYYVREMRVMAYTQLLESYRSLTLEYMANAFGVTVEFIDNELSR
FIAVGRLHCKIDKVGGVVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINI

Nucleotide sequence

Length: 1,651

>KH2012:KH.S988.2.v1.R.ND2-1
TTTCAAATTTAACTTATTGTTGTCGAGCCTTGGATTCTATTTCATATTAACAAGATTTTA
ACTTTGTTGGTAAATTAAACTTGAAAATGCCGATTGAAAACTTAGAAGAGGAAGGCTTGG
CGAAAATCCCGAATCTTGAAATTGCTCAACTCGAGTTCCAGCTAACTTTGGATCCGTTGA
ACGCGAAAGTTAAAGATGAGTTGCTCGCTTTTATCAAGAAAGACAACATGTCACCTTACT
ATGAGAAAGTTTGCAAAGCTTTTGGATTTAAGTTGGATGAGGGTTTGTTGGAAAAGATGA
AAAATGAAAACACAAAAGAACTTTCGAAACTTGACGAGAAAATCTCTGAGGAAGTTGAAT
ACGAGTCCGATGAAAAAGACGCGTTGTTGTCGAAAGCAGAATTCCTTTGCAAGATTGGGG
AGAAGGAAGGATGTTTAACAGTGTTCCGTAAAGCTTACGATAAAACGATCGCGTTGGGCC
ATCGTCTCGATATTATTTTCAATCTTATTCGCGTTGGTTTGTTTTATTTGGACCATGATT
TAATTACAAGGAATATTGATAAAGCTAAACATTTGTAAAGAAAAAATGTTACTAGCATAT
GGTTTATGCTCTAAAGGACATTATGTTGGTATGATGGAACTTCCTTTGTAAGAAGAAGAG
CCCGTTGATTGACGAGGGGGGCGATTGGGATCGAAGGAACCGGTTGAAAGTTTACCAAGG
ATTGTATTCGGTTGCCATCAGGGATTTCAAATCTGCCGCAAAGTTGTTCCTTGATACGGT
ATCTACGTTCACGTCGTATGAGTTAATGGATTATCAAACATTCGTTACTTATACTGTGTA
TGTTTGCATGCTGGCGTTGGATCGCTCCCAACTACGAGAGAAGGTTGTTAAGGGATCGGA
AATACTTGAGGTTTTATTCGAGGAAGAAGCAACGAAAGAATTCTTGTTTTCGCTTTACGA
TTGTCGATACGGAAAGTTCTTCGTTAGATTAGCTGAAGTTGAAAGTCGGATGAAGAACGA
TCGTTTCTTCCACGCGCATTATCGATATTATGTTCGTGAGATGCGTGTCATGGCTTACAC
ACAACTCCTTGAGTCATATCGCAGTTTAACATTGGAATATATGGCTAATGCATTCGGGGT
AACGGTGGAATTTATTGACAACGAACTTTCCCGTTTCATTGCGGTTGGTCGTCTGCATTG
CAAGATCGACAAAGTTGGCGGAGTTGTTGAAACCAATCGTCCCGACAGCAAGAATTGGCA
GTACCAAGAAACGATCAAGAAAGGGGACTTGTTGTTGAACCGGGTGCAAAAGTTGTCGCG
TGTTATCAATATTTAGGTTGAAAGTAAAATGTCAACTTTATTTGGATTCTTGTTGTTGTG
ATATTACATGTTAAGATTGGTTACCATGGAAACCCAACCATTGGGTCAAAGTTCATGAAG
TTGTTTTTATAATTCTGCTGACGTGTCTCTTTACCCCATAGTAAACCGATGTAGCATGCG
TCACTAAGGATCGTAATACATTATGTTGGTTGGGGATGCGGGGGGTAGAATTTGTGCAAA
AGTTGGTGAATGTTCATTGTTGGGCAATAACGTAACCGAAATTGGTTGATGACGTCATAA
TCAATATGATTGTAAACCCGCAATCGCGTCG

InterProScan

PANTHER
PSMD6 (IPR035268) - T[6-233] 3.3E-123
Pfam
Rpn7/CSN1 (IPR019585) - T[10-83] 1.1E-24
Pfam
PCI_dom (IPR000717) - T[100-201] 4.7E-16
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[128-210] 2.95E-19
SMART
PCI_dom (IPR000717) - T[134-217] 6.1E-22

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PSMD6_HUMAN 78.509 % 367 2.09E-128