Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.S988.2.v1.A.nonSL7-1

Possible name(s)

GPS1; PSMD6

Gene model

KH2012:KH.S988.2

Location

KhS988 [8,982 / 12,180]

Sequences

Amino acid sequence

Length: 233

>KH.S988.2.v1.A.nonSL7-1
WNFLCKKKSPLIDEGGDWDRRNRLKVYQGLYSVAIRDFKSAAKLFLDTVSTFTSYELMDY
QTFVTYTVYVCMLALDRSQLREKVVKGSEILEVLFEEEATKEFLFSLYDCRYGKFFVRLA
EVESRMKNDRFFHAHYRYYVREMRVMAYTQLLESYRSLTLEYMANAFGVTVEFIDNELSR
FIAVGRLHCKIDKVGGVVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINI

Nucleotide sequence

Length: 1,667

>KH2012:KH.S988.2.v1.A.nonSL7-1
ATTCATCGACATCTTATTTCAAATTTAACTTATTGTTGTCGAGCCTTGGATTCTATTTCA
TATTAACAAGATTTTAACTTTGTTGGTAAATTAAACTTGAAAATGCCGATTGAAAACTTA
GAAGAGGAAGGCTTGGCGAAAATCCCGAATCTTGAAATTGCTCAACTCGAGTTCCAGCTA
ACTTTGGATCCGTTGAACGCGAAAGTTAAAGATGAGTTGCTCGCTTTTATCAAGAAAGAC
AACATGTCACCTTACTATGAGAAAGTTTGCAAAGCTTTTGGATTTAAGTTGGATGAGGGT
TTGTTGGAAAAGATGAAAAATGAAAACACAAAAGAACTTTCGAAACTTGACGAGAAAATC
TCTGAGGAAGTTGAATACGAGTCCGATGAAAAAGACGCGTTGTTGTCGAAAGCAGAATTC
CTTTGCAAGATTGGGGAGAAGGAAGGATGTTTAACAGTGTTCCGTAAAGCTTACGATAAA
ACGATCGCGTTGGGCCATCGTCTCGATATTATTTTCAATCTTATTCGCGTTGGTTTGTTT
TATTTGGACCATGATTTAATTACAAGGAATATTGATAAAGCTAAACATTTGTAAAGAAAA
AATGTTACTAGCATATGGTTTATGCTCTAAAGGACATTATGTTGGTATGATGGAACTTCC
TTTGTAAGAAGAAGAGCCCGTTGATTGACGAGGGGGGCGATTGGGATCGAAGGAACCGGT
TGAAAGTTTACCAAGGATTGTATTCGGTTGCCATCAGGGATTTCAAATCTGCCGCAAAGT
TGTTCCTTGATACGGTATCTACGTTCACGTCGTATGAGTTAATGGATTATCAAACATTCG
TTACTTATACTGTGTATGTTTGCATGCTGGCGTTGGATCGCTCCCAACTACGAGAGAAGG
TTGTTAAGGGATCGGAAATACTTGAGGTTTTATTCGAGGAAGAAGCAACGAAAGAATTCT
TGTTTTCGCTTTACGATTGTCGATACGGAAAGTTCTTCGTTAGATTAGCTGAAGTTGAAA
GTCGGATGAAGAACGATCGTTTCTTCCACGCGCATTATCGATATTATGTTCGTGAGATGC
GTGTCATGGCTTACACACAACTCCTTGAGTCATATCGCAGTTTAACATTGGAATATATGG
CTAATGCATTCGGGGTAACGGTGGAATTTATTGACAACGAACTTTCCCGTTTCATTGCGG
TTGGTCGTCTGCATTGCAAGATCGACAAAGTTGGCGGAGTTGTTGAAACCAATCGTCCCG
ACAGCAAGAATTGGCAGTACCAAGAAACGATCAAGAAAGGGGACTTGTTGTTGAACCGGG
TGCAAAAGTTGTCGCGTGTTATCAATATTTAGGTTGAAAGTAAAATGTCAACTTTATTTG
GATTCTTGTTGTTGTGATATTACATGTTAAGATTGGTTACCATGGAAACCCAACCATTGG
GTCAAAGTTCATGAAGTTGTTTTTATAATTCTGCTGACGTGTCTCTTTACCCCATAGTAA
ACCGATGTAGCATGCGTCACTAAGGATCGTAATACATTATGTTGGTTGGGGATGCGGGGG
GTAGAATTTGTGCAAAAGTTGGTGAATGTTCATTGTTGGGCAATAACGTAACCGAAATTG
GTTGATGACGTCATAATCAATATGATTGTAAACCCGCAATCGCGTCG

InterProScan

PANTHER	PSMD6 (IPR035268) - T[6-233] 3.3E-123
Pfam	Rpn7/CSN1 (IPR019585) - T[10-83] 1.1E-24
Pfam	PCI_dom (IPR000717) - T[100-201] 4.7E-16
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[128-210] 2.95E-19
SMART	PCI_dom (IPR000717) - T[134-217] 6.1E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PSMD6_HUMAN	78.509 %	367	2.09E-128