Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.S988.2.v1.A.nonSL5-1

Possible name(s)

GPS1; PSMD6

Gene model

KH2012:KH.S988.2

Location

KhS988 [8,982 / 12,149]

Sequences

Amino acid sequence

Length: 233

>KH.S988.2.v1.A.nonSL5-1
WNFLCKKKSPLIDEGGDWDRRNRLKVYQGLYSVAIRDFKSAAKLFLDTVSTFTSYELMDY
QTFVTYTVYVCMLALDRSQLREKVVKGSEILEVLFEEEATKEFLFSLYDCRYGKFFVRLA
EVESRMKNDRFFHAHYRYYVREMRVMAYTQLLESYRSLTLEYMANAFGVTVEFIDNELSR
FIAVGRLHCKIDKVGGVVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINI

Nucleotide sequence

Length: 1,636

>KH2012:KH.S988.2.v1.A.nonSL5-1
ATTGTTGTCGAGCCTTGGATTCTATTTCATATTAACAAGATTTTAACTTTGTTGGTAAAT
TAAACTTGAAAATGCCGATTGAAAACTTAGAAGAGGAAGGCTTGGCGAAAATCCCGAATC
TTGAAATTGCTCAACTCGAGTTCCAGCTAACTTTGGATCCGTTGAACGCGAAAGTTAAAG
ATGAGTTGCTCGCTTTTATCAAGAAAGACAACATGTCACCTTACTATGAGAAAGTTTGCA
AAGCTTTTGGATTTAAGTTGGATGAGGGTTTGTTGGAAAAGATGAAAAATGAAAACACAA
AAGAACTTTCGAAACTTGACGAGAAAATCTCTGAGGAAGTTGAATACGAGTCCGATGAAA
AAGACGCGTTGTTGTCGAAAGCAGAATTCCTTTGCAAGATTGGGGAGAAGGAAGGATGTT
TAACAGTGTTCCGTAAAGCTTACGATAAAACGATCGCGTTGGGCCATCGTCTCGATATTA
TTTTCAATCTTATTCGCGTTGGTTTGTTTTATTTGGACCATGATTTAATTACAAGGAATA
TTGATAAAGCTAAACATTTGTAAAGAAAAAATGTTACTAGCATATGGTTTATGCTCTAAA
GGACATTATGTTGGTATGATGGAACTTCCTTTGTAAGAAGAAGAGCCCGTTGATTGACGA
GGGGGGCGATTGGGATCGAAGGAACCGGTTGAAAGTTTACCAAGGATTGTATTCGGTTGC
CATCAGGGATTTCAAATCTGCCGCAAAGTTGTTCCTTGATACGGTATCTACGTTCACGTC
GTATGAGTTAATGGATTATCAAACATTCGTTACTTATACTGTGTATGTTTGCATGCTGGC
GTTGGATCGCTCCCAACTACGAGAGAAGGTTGTTAAGGGATCGGAAATACTTGAGGTTTT
ATTCGAGGAAGAAGCAACGAAAGAATTCTTGTTTTCGCTTTACGATTGTCGATACGGAAA
GTTCTTCGTTAGATTAGCTGAAGTTGAAAGTCGGATGAAGAACGATCGTTTCTTCCACGC
GCATTATCGATATTATGTTCGTGAGATGCGTGTCATGGCTTACACACAACTCCTTGAGTC
ATATCGCAGTTTAACATTGGAATATATGGCTAATGCATTCGGGGTAACGGTGGAATTTAT
TGACAACGAACTTTCCCGTTTCATTGCGGTTGGTCGTCTGCATTGCAAGATCGACAAAGT
TGGCGGAGTTGTTGAAACCAATCGTCCCGACAGCAAGAATTGGCAGTACCAAGAAACGAT
CAAGAAAGGGGACTTGTTGTTGAACCGGGTGCAAAAGTTGTCGCGTGTTATCAATATTTA
GGTTGAAAGTAAAATGTCAACTTTATTTGGATTCTTGTTGTTGTGATATTACATGTTAAG
ATTGGTTACCATGGAAACCCAACCATTGGGTCAAAGTTCATGAAGTTGTTTTTATAATTC
TGCTGACGTGTCTCTTTACCCCATAGTAAACCGATGTAGCATGCGTCACTAAGGATCGTA
ATACATTATGTTGGTTGGGGATGCGGGGGGTAGAATTTGTGCAAAAGTTGGTGAATGTTC
ATTGTTGGGCAATAACGTAACCGAAATTGGTTGATGACGTCATAATCAATATGATTGTAA
ACCCGCAATCGCGTCG

InterProScan

PANTHER	PSMD6 (IPR035268) - T[6-233] 3.3E-123
Pfam	Rpn7/CSN1 (IPR019585) - T[10-83] 1.1E-24
Pfam	PCI_dom (IPR000717) - T[100-201] 4.7E-16
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[128-210] 2.95E-19
SMART	PCI_dom (IPR000717) - T[134-217] 6.1E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PSMD6_HUMAN	78.509 %	367	2.09E-128