- Molecular Tool 'pFT>Fgf9/16/20 (Hudson 2016)' >
- Transcript 'KH2012:KH.S988.1.v3....'
Transcript Model
Transcript Id
KH2012:KH.S988.1.v3.A.nonSL13-1
Possible name(s)
ARPC1A; ARPC1B; CIAO1
Gene model
Location
KhS988 [12,689 / 15,548]
Amino acid sequence
Length: 263
>KH.S988.1.v3.A.nonSL13-1
IYKKSGKKWDHIHTLSEHTLKVTDIDWAPKTNRIVTCGADRNAYVWQLTNGEWVQELVIL
RINRAATYVRWSPQEDKFAVGSSSRMISVCYFESDNNWWVSKHIKKPIRSTIVSLDWHPN
NILLAAGCCDYKAYVFSAYIKEINPKPGPTVWGKKMTFGCLMQEFVMPCTGWVHGIAFSN
SGDCLAMVSHGSVLSVAKGGGELTSIRTEFLPFNDCVWFGENSIIAGVCVYGPHQFSTCG
KDGNVVVWDNKSLEASIAGLRIN
Nucleotide sequence
Length: 1,735
>KH2012:KH.S988.1.v3.A.nonSL13-1
TGATTTACAAGAAATCCGGGAAGAAATGGGATCATATTCATACATTAAGCGAACATACAC
TTAAAGTTACAGACATCGATTGGGCCCCGAAGACGAACCGTATTGTTACGTGCGGTGCCG
ACAGAAACGCCTATGTTTGGCAACTTACTAACGGGGAATGGGTGCAAGAATTGGTGATTC
TTCGTATTAATCGAGCAGCGACGTACGTACGATGGTCGCCACAGGAAGATAAGTTTGCTG
TCGGAAGTTCATCACGCATGATTTCCGTTTGCTACTTTGAGTCCGATAATAATTGGTGGG
TGAGCAAACATATCAAGAAACCTATCAGATCCACCATTGTTTCGTTGGATTGGCATCCGA
ACAACATTTTACTCGCGGCTGGTTGTTGCGATTACAAAGCTTACGTGTTCTCGGCTTACA
TCAAAGAAATCAATCCAAAACCTGGTCCTACAGTTTGGGGGAAGAAGATGACGTTTGGAT
GTTTGATGCAGGAGTTTGTGATGCCTTGTACTGGATGGGTTCACGGAATCGCATTTTCAA
ACTCTGGCGATTGTTTAGCGATGGTGTCCCACGGCAGTGTGCTCTCTGTCGCCAAAGGTG
GTGGAGAATTAACATCAATCAGGACGGAGTTTCTTCCATTTAACGATTGTGTTTGGTTTG
GGGAGAACAGCATAATTGCAGGGGTATGCGTGTACGGGCCACACCAGTTCTCAACATGTG
GTAAAGATGGAAACGTTGTTGTTTGGGACAACAAGTCACTTGAAGCATCTATTGCTGGTC
TTCGAATTAATTAATATGTAACAATGGAGTGATCATGCCTATTATTACATCATAATCAAC
TATTATTACATCATAATCAACTATACCATTCAAGAAACAATAAAGAGAATGAACACATAA
CGAGAAAAAATAAAACCCAAACTCGGAATCCAGCGTTGTTCTTTATTGCCTGTAATATAT
TATTTCTATGAATATCATGTATAATTTATAAGATATCTATCCCACCTCTCGTAACTCCTC
GTTCCCATCTTTAACATTTTCCGAACTTTCAACGATTTTTTCCGAAACAAGTTCGATGTC
CGCTTCTTGTTGGAAAACCTGGGGTGGGGAGGTTAATGAATGACTAATTATTATTTCTTC
CAATGATAATATTGGAGAGAATTAGCAGCAAAACAACACTTGTTAAATTAATGACCAACC
TGTTCGCTAAACATCTCGTGCAACTTTGCGATCTCGACAACTTTTCCACCGATGGAACGA
ACTTCATCGCTCAATGAATTCATGTCTGATAATAATTGGGCATTTTCCTGTGCAAACTGT
AATGTATAGTAGGGTGGCGTGTTATACACCTCATGCTCATTGGACACTGTAGGTGCCCAG
CATAAGTATGTTAAACATAAGGTTCATGATTTGGCAATGATCAGCATTACATTAAAAGTT
TGGCGTATATGTTATATATACTCCATATAAGATCCCACTAACCGTCTCATCATCATCTGG
GACCAAACCATCGTCATCGCTTTCCTCAAACAAATACTTTGGATTATGCTTTACTTGACC
CGGCAATCTTTCTGAACTTTTTGCTCGAGTCGAATTCAAGCGCAACTGTGACCTAAACAA
TACATTTGATGATGTCACAATCCCACCCATTATCATCCAACAATGACCATTATTACTCAC
ACAGTGTTTCGTTCAACAATCTGTTTCACCCGAACCGATTTCTGTTCGTTATAAA
| PANTHER |
ARPC1 (IPR017383) - T[1-227] 3.3E-111 - T[234-261] 3.3E-111 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[1-253] 7.94E-36 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-233] 7.7E-103 |
| SMART |
WD40_repeat (IPR001680) - T[8-47] 1.7E-6 - T[52-91] 80.0 - T[101-137] 3.0 - T[162-198] 180.0 - T[211-249] 13.0 |
| Pfam |
WD40_repeat (IPR001680) - T[10-46] 5.2E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[15-56] 12.58 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[15-56] 11.787 |
| Pfam |
Apc4_WD40_dom (IPR024977) - T[70-143] 2.6E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ARC1A_HUMAN | 62.609 % | 297 | 2.05E-100 |
| ARC1B_HUMAN | 58.515 % | 278 | 4.15E-93 |