- Transcript 'KH2012:KH.C2.821.v1....' >
- Molecular Tool 'BIO' >
- Transcript 'KH2012:KH.S988.1.v2....'
Transcript Model
Transcript Id
KH2012:KH.S988.1.v2.A.SL2-1
Possible name(s)
ARPC1A; ARPC1B; CIAO1
Gene model
Location
KhS988 [12,498 / 15,548]
Amino acid sequence
Length: 225
>KH.S988.1.v2.A.SL2-1
FVERSYCCCCFVRVDCPESTNFLFIHSVVKMGEVFNFGVHPISCHSWNHDRTQIALSPNS
NDVLIYKKSGKKWDHIHTLSEHTLKVTDIDWAPKTNRIVTCGADRNAYVWQLTNGEWVQE
LIHHCFVGLASEQHFTRGWLLRLQSLRVLGLHQRNQSKTWSYSLGEEDDVWMFDAGVCDA
LYWMGSRNRIFKLWRLFSDGVPRQCALCRQRWWRININQDGVSSI
Nucleotide sequence
Length: 1,978
>KH2012:KH.S988.1.v2.A.SL2-1
TTTCGTTGAAAGAAGTTATTGTTGTTGTTGTTTTGTTCGTGTAGACTGTCCAGAGTCCAC
GAACTTTTTATTCATACATTCCGTTGTAAAAATGGGTGAAGTTTTTAACTTTGGGGTTCA
CCCCATTAGTTGTCATTCATGGAATCATGACCGCACGCAAATTGCTTTGAGTCCAAACAG
CAACGATGTTTTGATTTACAAGAAATCCGGGAAGAAATGGGATCATATTCATACATTAAG
CGAACATACACTTAAAGTTACAGACATCGATTGGGCCCCGAAGACGAACCGTATTGTTAC
GTGCGGTGCCGACAGAAACGCCTATGTTTGGCAACTTACTAACGGGGAATGGGTGCAAGA
ATTGATCCACCATTGTTTCGTTGGATTGGCATCCGAACAACATTTTACTCGCGGCTGGTT
GTTGCGATTACAAAGCTTACGTGTTCTCGGCTTACATCAAAGAAATCAATCCAAAACCTG
GTCCTACAGTTTGGGGGAAGAAGATGACGTTTGGATGTTTGATGCAGGAGTTTGTGATGC
CTTGTACTGGATGGGTTCACGGAATCGCATTTTCAAACTCTGGCGATTGTTTAGCGATGG
TGTCCCACGGCAGTGTGCTCTCTGTCGCCAAAGGTGGTGGAGAATTAACATCAATCAGGA
CGGAGTTTCTTCCATTTAACGATTGTGTTTGGTTTGGGGAGAACAGCATAATTGCAGGGG
GCCACGATTGCAACCCTGTGCTGTTCAAAGTTGAAGGGGATTGTTCAAAAGTTGCGTTCG
CCAACAAACTTGATCAACCCCCTAAAGGAGGGGGTGGGGGAAAAGCTGTGTCGGCCATGA
ATATGTTTAAGATGATGGATAAGAAAGGAACCGTAGAGGCGACTTCCACTGATCTTACTA
CAAAGCATAAGAACGCAATCATACAGGTATGCGTGTACGGGCCACACCAGTTCTCAACAT
GTGGTAAAGATGGAAACGTTGTTGTTTGGGACAACAAGTCACTTGAAGCATCTATTGCTG
GTCTTCGAATTAATTAATATGTAACAATGGAGTGATCATGCCTATTATTACATCATAATC
AACTATTATTACATCATAATCAACTATACCATTCAAGAAACAATAAAGAGAATGAACACA
TAACGAGAAAAAATAAAACCCAAACTCGGAATCCAGCGTTGTTCTTTATTGCCTGTAATA
TATTATTTCTATGAATATCATGTATAATTTATAAGATATCTATCCCACCTCTCGTAACTC
CTCGTTCCCATCTTTAACATTTTCCGAACTTTCAACGATTTTTTCCGAAACAAGTTCGAT
GTCCGCTTCTTGTTGGAAAACCTGGGGTGGGGAGGTTAATGAATGACTAATTATTATTTC
TTCCAATGATAATATTGGAGAGAATTAGCAGCAAAACAACACTTGTTAAATTAATGACCA
ACCTGTTCGCTAAACATCTCGTGCAACTTTGCGATCTCGACAACTTTTCCACCGATGGAA
CGAACTTCATCGCTCAATGAATTCATGTCTGATAATAATTGGGCATTTTCCTGTGCAAAC
TGTAATGTATAGTAGGGTGGCGTGTTATACACCTCATGCTCATTGGACACTGTAGGTGCC
CAGCATAAGTATGTTAAACATAAGGTTCATGATTTGGCAATGATCAGCATTACATTAAAA
GTTTGGCGTATATGTTATATATACTCCATATAAGATCCCACTAACCGTCTCATCATCATC
TGGGACCAAACCATCGTCATCGCTTTCCTCAAACAAATACTTTGGATTATGCTTTACTTG
ACCCGGCAATCTTTCTGAACTTTTTGCTCGAGTCGAATTCAAGCGCAACTGTGACCTAAA
CAATACATTTGATGATGTCACAATCCCACCCATTATCATCCAACAATGACCATTATTACT
CACACAGTGTTTCGTTCAACAATCTGTTTCACCCGAACCGATTTCTGTTCGTTATAAA
| PANTHER |
ARPC1 (IPR017383) - T[28-122] 9.4E-39 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[30-128] 1.2E-34 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[34-199] 1.33E-16 |
| SMART |
WD40_repeat (IPR001680) - T[72-111] 1.7E-6 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[79-120] 11.787 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[79-120] 12.58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ARC1A_HUMAN | 60.465 % | 116 | 6.46E-31 |
| ARC1B_HUMAN | 60.92 % | 118 | 1.16E-31 |