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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.S988.1.v1....' > 
  2. Molecular Tool 'FGF8/17/18-MO (Hitoyoshi's MO)' > 
  3. Transcript 'KH2012:KH.S988.1.v2....'

Transcript Model

Transcript Id

KH2012:KH.S988.1.v2.A.nonSL16-1

Possible name(s)

ARPC1A; ARPC1B; CIAO1

Gene model

KH2012:KH.S988.1

Location

KhS988 [12,515 / 15,548]

Sequences

Amino acid sequence

Length: 223

>KH.S988.1.v2.A.nonSL16-1
STIVSLDWHPNNILLAAGCCDYKAYVFSAYIKEINPKPGPTVWGKKMTFGCLMQEFVMPC
TGWVHGIAFSNSGDCLAMVSHGSVLSVAKGGGELTSIRTEFLPFNDCVWFGENSIIAGGH
DCNPVLFKVEGDCSKVAFANKLDQPPKGGGGGKAVSAMNMFKMMDKKGTVEATSTDLTTK
HKNAIIQVCVYGPHQFSTCGKDGNVVVWDNKSLEASIAGLRIN

Nucleotide sequence

Length: 1,961

>KH2012:KH.S988.1.v2.A.nonSL16-1
ATTGTTGTTGTTGTTTTGTTCGTGTAGACTGTCCAGAGTCCACGAACTTTTTATTCATAC
ATTCCGTTGTAAAAATGGGTGAAGTTTTTAACTTTGGGGTTCACCCCATTAGTTGTCATT
CATGGAATCATGACCGCACGCAAATTGCTTTGAGTCCAAACAGCAACGATGTTTTGATTT
ACAAGAAATCCGGGAAGAAATGGGATCATATTCATACATTAAGCGAACATACACTTAAAG
TTACAGACATCGATTGGGCCCCGAAGACGAACCGTATTGTTACGTGCGGTGCCGACAGAA
ACGCCTATGTTTGGCAACTTACTAACGGGGAATGGGTGCAAGAATTGATCCACCATTGTT
TCGTTGGATTGGCATCCGAACAACATTTTACTCGCGGCTGGTTGTTGCGATTACAAAGCT
TACGTGTTCTCGGCTTACATCAAAGAAATCAATCCAAAACCTGGTCCTACAGTTTGGGGG
AAGAAGATGACGTTTGGATGTTTGATGCAGGAGTTTGTGATGCCTTGTACTGGATGGGTT
CACGGAATCGCATTTTCAAACTCTGGCGATTGTTTAGCGATGGTGTCCCACGGCAGTGTG
CTCTCTGTCGCCAAAGGTGGTGGAGAATTAACATCAATCAGGACGGAGTTTCTTCCATTT
AACGATTGTGTTTGGTTTGGGGAGAACAGCATAATTGCAGGGGGCCACGATTGCAACCCT
GTGCTGTTCAAAGTTGAAGGGGATTGTTCAAAAGTTGCGTTCGCCAACAAACTTGATCAA
CCCCCTAAAGGAGGGGGTGGGGGAAAAGCTGTGTCGGCCATGAATATGTTTAAGATGATG
GATAAGAAAGGAACCGTAGAGGCGACTTCCACTGATCTTACTACAAAGCATAAGAACGCA
ATCATACAGGTATGCGTGTACGGGCCACACCAGTTCTCAACATGTGGTAAAGATGGAAAC
GTTGTTGTTTGGGACAACAAGTCACTTGAAGCATCTATTGCTGGTCTTCGAATTAATTAA
TATGTAACAATGGAGTGATCATGCCTATTATTACATCATAATCAACTATTATTACATCAT
AATCAACTATACCATTCAAGAAACAATAAAGAGAATGAACACATAACGAGAAAAAATAAA
ACCCAAACTCGGAATCCAGCGTTGTTCTTTATTGCCTGTAATATATTATTTCTATGAATA
TCATGTATAATTTATAAGATATCTATCCCACCTCTCGTAACTCCTCGTTCCCATCTTTAA
CATTTTCCGAACTTTCAACGATTTTTTCCGAAACAAGTTCGATGTCCGCTTCTTGTTGGA
AAACCTGGGGTGGGGAGGTTAATGAATGACTAATTATTATTTCTTCCAATGATAATATTG
GAGAGAATTAGCAGCAAAACAACACTTGTTAAATTAATGACCAACCTGTTCGCTAAACAT
CTCGTGCAACTTTGCGATCTCGACAACTTTTCCACCGATGGAACGAACTTCATCGCTCAA
TGAATTCATGTCTGATAATAATTGGGCATTTTCCTGTGCAAACTGTAATGTATAGTAGGG
TGGCGTGTTATACACCTCATGCTCATTGGACACTGTAGGTGCCCAGCATAAGTATGTTAA
ACATAAGGTTCATGATTTGGCAATGATCAGCATTACATTAAAAGTTTGGCGTATATGTTA
TATATACTCCATATAAGATCCCACTAACCGTCTCATCATCATCTGGGACCAAACCATCGT
CATCGCTTTCCTCAAACAAATACTTTGGATTATGCTTTACTTGACCCGGCAATCTTTCTG
AACTTTTTGCTCGAGTCGAATTCAAGCGCAACTGTGACCTAAACAATACATTTGATGATG
TCACAATCCCACCCATTATCATCCAACAATGACCATTATTACTCACACAGTGTTTCGTTC
AACAATCTGTTTCACCCGAACCGATTTCTGTTCGTTATAAA

InterProScan

PANTHER
ARPC1 (IPR017383) - T[1-221] 3.1E-67
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-209] 1.6E-67
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[2-141] 3.66E-15 - T[169-213] 3.66E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ARC1A_HUMAN 49.565 % 213 3.88E-68
ARC1B_HUMAN 42.672 % 184 4.68E-57