- Transcript 'Harore.CG.MTP2014.S1...' >
- EST 'AHC0AAA152YM06_RM1' >
- Transcript 'Moocci.CG.ELv1_2.S48...' >
- Transcript 'Cisavi.CG.ENS81.R106...' >
- Transcript 'KH2012:KH.S765.3.v1....'
Transcript Model
Transcript Id
KH2012:KH.S765.3.v1.A.SL2-1
Possible name(s)
HOXA5; HOXB5; HOXC4
Gene model
Location
KhS765 [6,444 / 8,647]
Amino acid sequence
Length: 226
>KH.S765.3.v1.A.SL2-1
GVCDDIMDLNNANFNALLRHPIASDALLRHKASLQSHSSVAGTSSNGYFVPESRNTSKYS
ENQPLSSMTHEWGIMEPRPINSQHPGHVMQHPFHGNDVIRDHHGFVTSPSIRDVTERKSD
ESSDGSDRDAIIYPWMKRIHGGETPDPSKRTRTAYTRYQTLELEKEFHYNRYLTRRRRIE
VAHTLCLTERQIKIWFQNRRMKWKKENKLSSLNSVTHVSGPLSGDD
Nucleotide sequence
Length: 1,125
>KH2012:KH.S765.3.v1.A.SL2-1
GATTATCAATAGTACGAGAATGAGGTGTTTGTGACGATATAATGGATTTGAACAATGCTA
ACTTTAATGCTTTGTTACGTCACCCCATTGCTTCAGATGCATTATTACGTCATAAAGCAT
CACTTCAAAGTCATTCGAGCGTAGCTGGTACGTCATCAAACGGATATTTCGTTCCAGAAT
CGAGAAACACTTCCAAGTATTCTGAAAATCAACCATTATCATCTATGACGCATGAATGGG
GTATTATGGAACCTCGTCCAATCAACAGCCAGCATCCCGGTCACGTGATGCAGCATCCTT
TTCACGGAAATGACGTCATTCGCGACCACCATGGTTTCGTGACGTCACCTTCCATTCGTG
ACGTCACCGAGCGTAAGAGTGACGAAAGCAGTGACGGAAGCGATCGTGACGCAATAATAT
ACCCGTGGATGAAAAGAATTCATGGAGGGGAAACCCCAGACCCGAGCAAGCGAACCAGGA
CAGCTTATACGAGGTACCAGACATTGGAACTTGAAAAAGAGTTTCATTACAACCGTTACC
TAACCCGTCGTCGCCGCATAGAGGTCGCCCATACTTTGTGTCTCACCGAACGTCAGATCA
AGATATGGTTTCAAAACAGGAGGATGAAATGGAAGAAAGAAAACAAACTTTCTTCACTTA
ATTCTGTCACTCATGTGTCGGGGCCGCTAAGCGGTGACGACTAACATTCTATTAGTGCTG
TTGTCTTCGTTATACCGAAATGAGAGACCAAAAAAGACTGTATGTTAGAGGTTATCCTAT
ATAGTAGGTTGGGGTAAGATGGTTCATGAGCCATTCTCTTTTATCGTCCCATTTGGTAGT
AAACAAAGAATATTTACTAAGTTATATAACTGTATCCTCTAAAAGAGCGTTGTTTAATTA
AAAAAACCTTAGGAAATATTGAATATTATGCGCCAACGTTACCCATCTTATCCCGCTCTA
ATGTATAACGTAGTAGGTTTTTCACCAGCGCTGTTGTATTATTTGATTCATATACAATGT
CGTTCATATATACCTCGCATGCTTGGCTTGTACAACAAGCATATCGTGCGTTGGTAAAGT
TGGTTCGTGGAAAGAAAGTTAAATTAAAACGGAGTGGACCATGTT
| PRINTS |
Homeobox_antennapedia (IPR017995) - T[131-138] 4.3E-6 - T[149-164] 4.3E-6 |
| ProSitePatterns |
Homeobox_Antennapedia_CS (IPR001827) - T[132-137] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[134-207] 6.84E-27 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[146-206] 21.459 |
| SMART |
Homeobox_dom (IPR001356) - T[148-210] 3.5E-25 |
| CDD |
Homeobox_dom (IPR001356) - T[149-207] 6.45534E-25 |
| Pfam |
Homeobox_dom (IPR001356) - T[149-205] 4.4E-21 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[170-181] 4.0E-9 - T[185-195] 4.0E-9 - T[195-204] 4.0E-9 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[181-204] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXB5_HUMAN | 58.824 % | 142 | 1.32E-41 |
| HXA5_HUMAN | 73.864 % | 140 | 4.08E-41 |
| HXC4_HUMAN | 61.905 % | 139 | 1.54E-40 |