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TRANSCRIPT CARD

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  1. Region 'REG00001182'
  2. Region 'REG00000688'
  3. Transcript 'KH2012:KH.S598.3.v1....'

Transcript Model

Transcript Id

KH2012:KH.S598.3.v1.A.nonSL3-1

Possible name(s)

ADIPOQ; C1QTNF7; EDA

Location

KhS598 [19,577 / 26,515]

Sequences

Amino acid sequence

Length: 398

>KH.S598.3.v1.A.nonSL3-1
ILNVCLKLFVRWFRCYGQSSEQGIWCTMDERGDISRNSISLNECPGIAENRDDEIQSIYI
SPSIRDIHSYRCSKSTAAQKNYGRKHPCVSLNCVWAVSTMFLIIIVFCVGVIKYIQLSEE
MEQMKKDFVSLQLELDTVRNPDALEMGDHSKLVGDKTPGASVPNGNSDVFVTPRERRGVT
VSPRNNRADLTHNSGLHGIAGRDGRDGRDGARGQQGPPGPLGPPGPSGASVRGPSGPRGP
PGFIGPEGRPGPPGLPGKDLTSSVLHLEGDRSPSVLSGSDGVLNHWIKSQWSSDVTFRYF
QHNGSIQVQSPGTYYIYSQLLTVDSSTDILSHEVKINGNTFLRCERISQRSTCFTSGVRR
MNKYDNVYLSTKYPQTTVDMTPDVSFFGMVQWSSHDEL

Nucleotide sequence

Length: 1,997

>KH2012:KH.S598.3.v1.A.nonSL3-1
ATATTAAATGTTTGTTTAAAGCTGTTTGTCAGGTGGTTTCGGTGTTATGGACAGAGCAGC
GAGCAAGGAATCTGGTGTACCATGGATGAAAGAGGTGATATATCACGCAATAGCATTTCC
CTGAATGAGTGCCCTGGAATAGCTGAGAACAGAGATGATGAAATACAAAGCATTTACATT
TCACCATCCATTAGAGATATTCATAGTTATCGATGCTCAAAATCCACTGCTGCTCAAAAA
AACTATGGTAGAAAACATCCTTGCGTATCACTCAACTGTGTGTGGGCCGTTAGCACAATG
TTTTTAATAATTATTGTGTTCTGTGTTGGGGTTATAAAATATATTCAACTCTCTGAAGAA
ATGGAACAAATGAAAAAAGATTTTGTGTCTTTGCAATTGGAATTGGACACAGTACGCAAC
CCTGATGCATTAGAAATGGGTGATCATTCAAAACTTGTTGGTGACAAGACACCAGGGGCA
TCTGTACCTAATGGAAATTCTGATGTATTTGTAACACCTAGAGAAAGACGCGGTGTAACA
GTTTCACCACGTAACAACCGTGCGGATTTGACACATAATTCAGGTTTGCATGGTATTGCT
GGCAGGGATGGGCGAGATGGAAGAGATGGTGCCAGAGGTCAACAGGGTCCACCTGGCCCA
CTAGGCCCTCCTGGCCCAAGTGGTGCTTCAGTGCGTGGTCCATCGGGCCCCAGAGGACCA
CCGGGTTTTATTGGACCTGAAGGAAGACCCGGACCTCCTGGTTTACCTGGAAAAGATCTC
ACTTCCTCAGTTTTGCATTTAGAAGGAGATCGATCGCCATCTGTACTTAGTGGAAGTGAT
GGAGTTCTTAACCATTGGATTAAAAGTCAATGGAGTTCAGATGTTACATTCCGTTATTTT
CAACATAATGGATCCATCCAAGTTCAATCACCTGGTACTTACTACATTTATAGTCAGTTA
CTCACAGTTGATTCTTCAACTGATATTCTGAGCCATGAAGTGAAAATCAATGGAAATACT
TTTCTGCGATGTGAGCGTATATCCCAACGTAGCACATGCTTTACTTCGGGTGTTCGAAGA
ATGAATAAATATGACAATGTGTATTTGTCCACTAAGTATCCACAAACAACAGTTGATATG
ACACCGGATGTTTCGTTCTTTGGAATGGTTCAGTGGTCATCACACGATGAGCTGTGATTG
GGTAAAACATCAGTGAACCCTACCAGTGATGGACACAAATATTTTCTACTGACTGTATTG
TATTTTAAACACACTGCGGAAAATACCCAAGAGTTTATAACTCAAACTGTGCTTTTCTAA
CATCGTTTTTATAAAATGTGAGATTTTTTACAGTTTTATATTCTGCAGTTTTTGTTGGGC
TTTAGGTTTAACTTCCATTGAGATAGAGAACGCTGGTAGTTTATCTCATTATCTGTAGAA
ATTCAAATAACCAAGGACAGTATTGTTACTACCCTCACACAGATAAATGTATTATATTTT
ATCTTCATAGTTCCTTATATGCTTGGACGAACGTACTATTAGATTGAGCGTTGCAGTCAT
ACTTTTGTAATATTTTAGCCACTGTGACTTAAAAAAGTCAGCCAAATCATTTTTACTGCC
GCTGTGTCAATTGACCAACAATCATTTAAATTAACTCTGTATCGTTTTACTGTTGATTTT
TATAATCTATCTCTACTGCCAAAACATGTGAAATTAATTTTAAAAAATTGCTATAACTGC
CATGTATCTGTTTTATTTAGATATTTTAAATTTCCATGTGTTTAAATTAACCTGCTTCTT
CTGAACTCACTACCCCCTAAAATTAATTTGTTAGTTTATTCAATATTCCTTTTTTTGTAT
TTCTGAAATACTGTTATAACCAAACACTAAACAAAGAAATCAATTGCTGTTTATTGTTTT
AATTGTGCCTTGTTACAACATCATTTAATTATCGTTTGTTCCATAACTTTGTACAAATTA
AAATGTTTAGATCATCA

InterProScan

Pfam
Collagen (IPR008160) - T[201-254] 8.4E-7
Gene3D
Tumour_necrosis_fac-like_dom (IPR008983) - T[260-391] 1.6E-24
ProSiteProfiles
TNF_dom (IPR006052) - T[264-321] 10.188
SUPERFAMILY
Tumour_necrosis_fac-like_dom (IPR008983) - T[284-395] 3.98E-20
Pfam
TNF_dom (IPR006052) - T[286-390] 2.3E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value