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TRANSCRIPT CARD

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  1. Clone 'cima821072'
  2. Clone 'cicl061n20'
  3. Transcript 'KH2012:KH.S598.3.v1....'

Transcript Model

Transcript Id

KH2012:KH.S598.3.v1.A.ND1-1

Possible name(s)

ADIPOQ; C1QTNF7; EDA

Location

KhS598 [19,577 / 26,679]

Sequences

Amino acid sequence

Length: 410

>KH.S598.3.v1.A.ND1-1
NRQKCIVEVIANILNVCLKLFVRWFRCYGQSSEQGIWCTMDERGDISRNSISLNECPGIA
ENRDDEIQSIYISPSIRDIHSYRCSKSTAAQKNYGRKHPCVSLNCVWAVSTMFLIIIVFC
VGVIKYIQLSEEMEQMKKDFVSLQLELDTVRNPDALEMGDHSKLVGDKTPGASVPNGNSD
VFVTPRERRGVTVSPRNNRADLTHNSGLHGIAGRDGRDGRDGARGQQGPPGPLGPPGPSG
ASVRGPSGPRGPPGFIGPEGRPGPPGLPGKDLTSSVLHLEGDRSPSVLSGSDGVLNHWIK
SQWSSDVTFRYFQHNGSIQVQSPGTYYIYSQLLTVDSSTDILSHEVKINGNTFLRCERIS
QRSTCFTSGVRRMNKYDNVYLSTKYPQTTVDMTPDVSFFGMVQWSSHDEL

Nucleotide sequence

Length: 2,161

>KH2012:KH.S598.3.v1.A.ND1-1
GTAAACATCTCGCGCGAAAATTAAGAAGTTTACGGTCCTTGGAAATTTAATAGGCGTGAT
GTTTGTTGGTTCTGCAGCGGCTAATCTAGGCAACCACACTGTATCCAGTTCAGTGTTGTA
ACATGTAGAACAGACAAAAGTGCATTGTGGAAGTAATTGCGAATATATTAAATGTTTGTT
TAAAGCTGTTTGTCAGGTGGTTTCGGTGTTATGGACAGAGCAGCGAGCAAGGAATCTGGT
GTACCATGGATGAAAGAGGTGATATATCACGCAATAGCATTTCCCTGAATGAGTGCCCTG
GAATAGCTGAGAACAGAGATGATGAAATACAAAGCATTTACATTTCACCATCCATTAGAG
ATATTCATAGTTATCGATGCTCAAAATCCACTGCTGCTCAAAAAAACTATGGTAGAAAAC
ATCCTTGCGTATCACTCAACTGTGTGTGGGCCGTTAGCACAATGTTTTTAATAATTATTG
TGTTCTGTGTTGGGGTTATAAAATATATTCAACTCTCTGAAGAAATGGAACAAATGAAAA
AAGATTTTGTGTCTTTGCAATTGGAATTGGACACAGTACGCAACCCTGATGCATTAGAAA
TGGGTGATCATTCAAAACTTGTTGGTGACAAGACACCAGGGGCATCTGTACCTAATGGAA
ATTCTGATGTATTTGTAACACCTAGAGAAAGACGCGGTGTAACAGTTTCACCACGTAACA
ACCGTGCGGATTTGACACATAATTCAGGTTTGCATGGTATTGCTGGCAGGGATGGGCGAG
ATGGAAGAGATGGTGCCAGAGGTCAACAGGGTCCACCTGGCCCACTAGGCCCTCCTGGCC
CAAGTGGTGCTTCAGTGCGTGGTCCATCGGGCCCCAGAGGACCACCGGGTTTTATTGGAC
CTGAAGGAAGACCCGGACCTCCTGGTTTACCTGGAAAAGATCTCACTTCCTCAGTTTTGC
ATTTAGAAGGAGATCGATCGCCATCTGTACTTAGTGGAAGTGATGGAGTTCTTAACCATT
GGATTAAAAGTCAATGGAGTTCAGATGTTACATTCCGTTATTTTCAACATAATGGATCCA
TCCAAGTTCAATCACCTGGTACTTACTACATTTATAGTCAGTTACTCACAGTTGATTCTT
CAACTGATATTCTGAGCCATGAAGTGAAAATCAATGGAAATACTTTTCTGCGATGTGAGC
GTATATCCCAACGTAGCACATGCTTTACTTCGGGTGTTCGAAGAATGAATAAATATGACA
ATGTGTATTTGTCCACTAAGTATCCACAAACAACAGTTGATATGACACCGGATGTTTCGT
TCTTTGGAATGGTTCAGTGGTCATCACACGATGAGCTGTGATTGGGTAAAACATCAGTGA
ACCCTACCAGTGATGGACACAAATATTTTCTACTGACTGTATTGTATTTTAAACACACTG
CGGAAAATACCCAAGAGTTTATAACTCAAACTGTGCTTTTCTAACATCGTTTTTATAAAA
TGTGAGATTTTTTACAGTTTTATATTCTGCAGTTTTTGTTGGGCTTTAGGTTTAACTTCC
ATTGAGATAGAGAACGCTGGTAGTTTATCTCATTATCTGTAGAAATTCAAATAACCAAGG
ACAGTATTGTTACTACCCTCACACAGATAAATGTATTATATTTTATCTTCATAGTTCCTT
ATATGCTTGGACGAACGTACTATTAGATTGAGCGTTGCAGTCATACTTTTGTAATATTTT
AGCCACTGTGACTTAAAAAAGTCAGCCAAATCATTTTTACTGCCGCTGTGTCAATTGACC
AACAATCATTTAAATTAACTCTGTATCGTTTTACTGTTGATTTTTATAATCTATCTCTAC
TGCCAAAACATGTGAAATTAATTTTAAAAAATTGCTATAACTGCCATGTATCTGTTTTAT
TTAGATATTTTAAATTTCCATGTGTTTAAATTAACCTGCTTCTTCTGAACTCACTACCCC
CTAAAATTAATTTGTTAGTTTATTCAATATTCCTTTTTTTGTATTTCTGAAATACTGTTA
TAACCAAACACTAAACAAAGAAATCAATTGCTGTTTATTGTTTTAATTGTGCCTTGTTAC
AACATCATTTAATTATCGTTTGTTCCATAACTTTGTACAAATTAAAATGTTTAGATCATC
A

InterProScan

Pfam
Collagen (IPR008160) - T[213-266] 9.6E-7
Gene3D
Tumour_necrosis_fac-like_dom (IPR008983) - T[272-403] 1.7E-24
ProSiteProfiles
TNF_dom (IPR006052) - T[276-333] 10.188
SUPERFAMILY
Tumour_necrosis_fac-like_dom (IPR008983) - T[296-407] 4.15E-20
Pfam
TNF_dom (IPR006052) - T[298-402] 2.4E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value