- Transcript 'KH2012:KH.L18.39.v1....' >
- Clone 'cilv024e04' >
- Transcript 'KH2012:KH.C9.228.v1....' >
- Transcript 'KH2012:KH.L97.3.v2.B...' >
- Transcript 'KH2012:KH.S396.6.v1....'
Transcript Model
Transcript Id
KH2012:KH.S396.6.v1.A.SL2-1
Possible name(s)
TRAF3; TRAF5; TRAF6
Gene model
Location
KhS396 [13,243 / 22,662]
Amino acid sequence
Length: 580
>KH.S396.6.v1.A.SL2-1
IMLKTTHLENSMDNNLTTTVDAVNGINDETVGYDYEFIPSLDNKYMCPICLLALRDPVQT
ECGHRFCHLCILRCIRSKASCPVDQITLFSNQLFQDRSAHREVLDLKAKCPNIGCDLVVE
LRNIKNHIAKCPHRRTPCKNGCGLELLEQDLVHHETSQCPNRPVTCPTCQQEYAFSAEKE
HEEECKQYEPVLCEHCNHEVKRYKLKQHMSSECPQAPIKCVFDKVGCHQQYPRHDIKTHM
ENTTQIHLQYLLSFIMNLQKQNDELQESLKVAKLKLDKTTAKENESSDATVSDRLRFESV
NISDGNIYSPNHEAASENDEIDEIDRIKVENKRREEAMVSSASSSSASSPLVGATGEPLN
NHLHLTMMVNKQTDQDGKIVRLDHHVRELMAKMETQILQIKDIQNRLTGMEQRIDNQELR
CCNGLYYWKIKDYAQLRRAACLGEMPVLHSPGFYTSPQGYRMCIRANLDGVESAQGTHLS
LFVHLMKGDFDDVLPWPFCGSITLTVINQKELPSQRAHVSEMLESRANLMAFQRPITERN
QKGYGYIDFLPLNLIETEGFIKSDTLVIKAQVHVYELSLQ
Nucleotide sequence
Length: 2,778
>KH2012:KH.S396.6.v1.A.SL2-1
TTACTGACATTTAAAGTAAAACTGAATAATGTTGAAGACAACCCATTTGGAAAACTCGAT
GGACAACAATCTTACAACCACCGTTGATGCTGTGAATGGAATAAACGATGAAACAGTTGG
ATATGATTATGAATTCATCCCATCTTTGGACAACAAGTATATGTGCCCTATCTGTTTGTT
GGCATTACGTGATCCTGTTCAAACAGAATGTGGGCATAGATTTTGCCATCTGTGTATATT
ACGCTGTATCAGAAGCAAAGCCAGTTGCCCAGTTGACCAAATAACATTGTTTTCCAACCA
ACTTTTCCAAGATCGCTCAGCTCACAGGGAGGTTTTGGACTTGAAAGCAAAATGTCCCAA
CATTGGATGTGATTTGGTTGTGGAATTGCGCAATATTAAGAACCACATAGCAAAGTGCCC
ACATAGGAGAACACCATGCAAGAATGGCTGTGGGTTGGAGTTGTTAGAACAAGACTTGGT
GCACCATGAGACAAGCCAGTGTCCAAATAGACCTGTGACTTGCCCAACATGCCAACAGGA
ATATGCTTTCTCTGCAGAAAAGGAACACGAGGAAGAATGTAAACAATATGAACCTGTGCT
ATGCGAACATTGCAATCATGAAGTTAAAAGATATAAATTAAAACAACACATGAGCAGTGA
ATGCCCGCAAGCTCCAATTAAATGTGTGTTTGATAAAGTAGGATGCCATCAACAGTACCC
CCGTCACGACATCAAGACGCATATGGAGAATACAACTCAAATTCACCTCCAATATTTACT
AAGTTTTATCATGAATTTACAAAAACAAAACGACGAGCTTCAAGAAAGCTTAAAAGTTGC
CAAATTAAAACTCGACAAAACAACAGCAAAGGAGAATGAATCTTCGGACGCCACTGTTTC
TGATCGCCTTAGATTTGAATCTGTCAATATTTCCGATGGAAACATTTATTCCCCCAATCA
TGAAGCTGCTTCAGAAAACGATGAAATTGATGAAATTGACCGGATCAAAGTTGAGAACAA
ACGAAGGGAAGAAGCAATGGTTTCGTCAGCATCGTCGTCCAGTGCTTCATCTCCACTAGT
GGGGGCCACAGGGGAACCACTGAACAACCATCTCCATCTAACGATGATGGTGAACAAACA
AACAGACCAGGACGGGAAAATTGTCAGACTTGACCACCACGTGCGTGAACTGATGGCGAA
GATGGAAACGCAAATATTACAAATCAAAGATATTCAAAACAGACTGACTGGGATGGAACA
AAGGATTGATAACCAGGAGTTGAGATGTTGCAATGGATTATATTATTGGAAAATTAAAGA
TTACGCACAATTACGCAGAGCAGCGTGTCTCGGTGAAATGCCGGTCTTACACAGCCCAGG
TTTCTACACAAGTCCCCAAGGTTATAGGATGTGTATCCGTGCCAACCTTGATGGGGTGGA
AAGCGCACAAGGAACCCATCTTTCCTTATTTGTTCATCTCATGAAAGGAGATTTTGATGA
TGTGTTACCTTGGCCTTTCTGTGGTTCAATCACACTCACTGTTATAAACCAGAAAGAGTT
GCCATCACAGCGGGCGCACGTGTCTGAAATGTTGGAATCGCGAGCCAACTTAATGGCTTT
CCAGCGTCCTATAACTGAGCGCAACCAGAAGGGATACGGCTACATAGACTTCTTACCACT
CAATTTAATCGAAACTGAAGGATTTATTAAATCAGACACGCTTGTTATAAAAGCTCAGGT
CCACGTTTATGAACTTTCTCTTCAATAAAACTAAAACTTGCAAAATTTTATTTTTATCTG
AATTTTATTTTTTATTTGAGAGAATTATAATTATGTCAGTTTCATTTAAATACATTATCT
CCTCCTGTATTTTTGTATGTCTGCCAAAACTTTACAACTTAATAAAACAAACTGTTAACA
AACTTTCGAACTTATGCTGTGCATCTTGAATGTAGACCGGGCTTTATAGTTTTAGTTCAA
TTATTATTTCACCCATTATCTGGTTGATCTGAACGTTATCAACATTTCATCCATTACTGT
CCTTTGTTGATTGGACCGTTAATGGCGTCTCACCTGTTATATTTCTTTTACTCATTTTCC
TGGCCAGATTTTTGAACTATTTTTAAACAACCTATAACTATATCATTGTAACGCGTCTAC
AATAGTGTTTATTTATGTTTATTGTTTTTTCCTCCAGTGTTTAATGTCCACGCAGTTTCA
TTCCCGTTACACAATGTAATATACCAGCAAGTATAACCGTGGGCAGAAGTCATGTTGTTA
TAAATCTATAAATAATATGATGTTTCAATCTGTTTGTGCATTAAGTTTATTACAAGTTGC
CATCTATTGTTGCTTTATTTGTTGTTATCATGCGATTGTACTTTGTTTGTAAAATCTATT
TAGGCTCAGTTTTCCATCACCACAGTAAACTGGCTTGCCATTTAAAAATACCAACTGTAT
TTCTGTGCTTTGTTTTGTGATAAATATATACTGATAACCACAATTTAGTGCTTCTCAACC
CCTCGGTCACCATTTGATTTGGGTGGGTCGCCTACTACAGTGGATCACAAACCCTTTTAA
ATGTTTTTGTAAAATTTAAACCAATTTATTGAATGCATACAAAAGTTATCTAAAATGTAG
TTTCGGAAATTATTGTTAAATCACATTCCCAAACTTTCTGCTCACACCTGTTTTATCCTC
CTATAATTTTCTGAGCTCTTCACGGTTAATAGTATAATACATAAAGTACTTTGAGTAAAA
TTGGTAAACTCTCGGCGA
| PIRSF |
TNF_rcpt--assoc_TRAF (IPR012227) - T[7-579] 1.5E-116 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[28-141] 1.1E-26 - T[142-189] 1.8E-8 - T[190-248] 2.3E-6 |
| SMART |
Znf_RING (IPR001841) - T[47-84] 1.4E-6 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[47-85] 11.648 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[62-71] . |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[106-174] 1.37E-7 - T[191-260] 6.54E-8 - T[422-576] 5.23E-37 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[152-237] 11.769 |
| Pfam |
Znf_TRAF (IPR001293) - T[181-239] 2.0E-8 |
| Gene3D |
TRAF-like (IPR008974) - T[377-574] 1.0E-56 |
| ProSiteProfiles |
MATH/TRAF_dom (IPR002083) - T[423-572] 22.309 |
| CDD |
TRAF6_MATH (IPR037309) - T[424-573] 5.2052E-82 |
| SMART |
MATH/TRAF_dom (IPR002083) - T[428-555] 0.001 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRAF3_HUMAN | 29.893 % | 214 | 6.05E-62 |
| TRAF5_HUMAN | 29.529 % | 209 | 1.92E-60 |
| TRAF6_HUMAN | 30.303 % | 246 | 2.21E-74 |