- Clone 'citb029m14' >
- Clone 'cien136157' >
- Region 'REG00000702' >
- Transcript 'KH2012:KH.L149.21.v1...' >
- Transcript 'KH2012:KH.S215.4.v2....'
Transcript Model
Transcript Id
KH2012:KH.S215.4.v2.A.SL1-1
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
KhS215 [96,002 / 105,573]
Amino acid sequence
Length: 597
>KH.S215.4.v2.A.SL1-1
TMQTGSEFHQNSAGSIRHQPDIAYHQDRKHLSTQQWDDNGKKSDVNQDDDFDQYVDDDVG
YDVGDDFDDDDDDDGIVVDCDDDRDSLMDLDFSTSLLSGHSGDFQDRKHDFPTSSLQELF
SMTQSVTSSSCDVTNLVTSSIQSHPDLNDSGIVTTVGESPQNPFLPQTSSKQTDSAGSLF
ALLSSDQRIQAKIPKCTGCDHHIFDRYILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSY
VYCKEDFFKRFGTKCSGCELAIPPTQVVRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLD
DSRLVCKKDYEHAKSRDLDMDNGIKRPRTTITAKQLETLKIAYNQSPKPARHVREQLSSD
TGLDMRVVQVWFQNRRAKEKRLKKDTGRQRWGELFRSGAPSSGPHCRPNPDSPPSGGKRR
VGGHSNRKRPSSSPGGTRIAIPIPSSIQSPGRAPTNGQIESNFIAPEHNAPPHDGIMMGE
SPCFAPGEVPYPQQSSNHAYLSPGSIPDMGGFPNLTRNYDYVDGPQILGPGMAPIMKPPT
NNAIPNYYVTSPQMHHNQHQKNDCDVISESSGHSNLSDLSSSPRSWLGELDHVTHFQ
Nucleotide sequence
Length: 2,625
>KH2012:KH.S215.4.v2.A.SL1-1
GAACGTAGACAATGCAGACCGGAAGTGAGTTTCATCAAAATTCAGCCGGAAGTATACGTC
ACCAACCGGATATTGCGTACCACCAAGACAGAAAGCATTTATCGACGCAACAATGGGATG
ACAATGGTAAAAAATCCGACGTGAATCAAGATGACGATTTTGACCAATACGTGGACGATG
ACGTAGGTTATGACGTAGGCGATGATTTTGATGATGACGACGACGATGACGGCATAGTGG
TCGATTGTGATGACGACAGAGACTCGCTGATGGATTTAGATTTTTCAACATCCTTGCTTT
CCGGTCACAGTGGGGATTTCCAGGATCGAAAACACGACTTTCCTACGTCATCGCTGCAAG
AACTATTCTCTATGACGCAATCGGTGACGTCATCAAGTTGTGACGTCACCAACCTCGTGA
CCAGCTCCATCCAATCACATCCCGACCTCAACGACTCGGGGATCGTTACCACAGTAGGGG
AATCCCCGCAGAACCCCTTTTTACCCCAAACCTCTTCGAAACAAACGGACAGCGCTGGGT
CGCTGTTCGCGCTTCTATCGTCCGATCAACGAATACAAGCCAAGATACCAAAATGCACCG
GATGCGACCACCATATATTCGACCGGTATATTCTCAAAGTACAGGACAAACCTTGGCATT
CACAATGTTTAAAATGCAACGACTGTGGGCGACAACTGACCGATAAATGTTTTTCTCGCG
GTAGTTACGTTTACTGCAAGGAAGATTTCTTCAAGAGGTTCGGCACCAAATGCTCCGGTT
GCGAACTCGCCATTCCCCCCACACAAGTGGTTAGGAGGGCACAGGACAACGTGTACCATC
TAGAATGCTTCAGATGTTTCATGTGTAGTGAGCAATTGGGCACCGGGGACCAATTCTATT
TGCTGGATGATAGTCGGCTTGTGTGTAAGAAAGATTACGAACATGCAAAGTCAAGAGATC
TTGACATGGACAACGGTATAAAGCGACCCCGCACCACTATCACAGCTAAGCAACTGGAAA
CACTGAAGATCGCTTACAATCAAAGCCCGAAACCTGCTCGCCACGTGAGGGAGCAGCTGA
GCTCGGACACCGGGTTAGACATGAGAGTAGTTCAGGTATGGTTTCAAAACAGAAGGGCGA
AAGAAAAACGTTTAAAGAAAGACACAGGCCGACAACGTTGGGGAGAGCTATTCCGATCAG
GGGCGCCGTCTAGTGGCCCTCATTGTCGACCAAACCCAGACTCCCCGCCCAGCGGTGGTA
AGCGTCGTGTTGGTGGCCATAGCAACCGTAAGCGGCCCTCTAGCTCTCCTGGTGGCACAC
GTATAGCTATCCCGATACCATCGTCGATTCAAAGCCCTGGTAGGGCGCCCACTAACGGAC
AAATTGAATCCAACTTTATTGCTCCCGAGCACAATGCGCCACCTCACGACGGTATCATGA
TGGGTGAATCCCCTTGCTTTGCACCTGGGGAAGTCCCGTACCCGCAACAATCTTCCAACC
ATGCTTATCTATCCCCTGGTAGTATTCCCGACATGGGGGGTTTCCCCAACCTGACACGAA
ACTACGATTACGTAGACGGCCCCCAAATATTGGGACCAGGAATGGCGCCTATCATGAAAC
CCCCCACCAACAACGCGATACCGAATTATTACGTCACAAGCCCACAAATGCATCACAATC
AACACCAGAAAAACGATTGTGACGTCATATCCGAAAGTAGCGGTCACTCGAACCTGAGCG
ATCTATCTTCAAGTCCAAGGTCATGGCTGGGTGAACTTGACCACGTGACACATTTCCAAT
AACTCGTTCCCCTAGAAAAGTTTTCACTGTGATTTCTATGCCGCCCGTACAATTATTAGG
GTTGGGTTAATTATTATTGAAGGTATCCGCTATTGAGAAAATATCCAGAGTTTTTGACCC
CAACTTCCCTTCTCCAACCTTCAACCCCCAATTTCTGACCTGTTACCCGTTACCTATTAC
CCCTAACTCCTATTCCTAACCCCAATTGCAAAGTTTCGCAATTCCGATGATTGAGACCAA
ATATTCGCGGTAATTTGACCCCGAAATATCTGGCAAAGTAACTTTCTTCTATGCACGCAT
GACTTTATTGCAAAACGGATTTTCTTAAAGCGGGTGCGTTCTATGATATATATCTCGCTA
AATTCTCGTCGTATTTGGGACTTTTACACCCCCATTAAAGTTACAATGGGTATTTATACA
GATATCTACAAACTATTACGCATCCATCCCCGCTGTTAACCAATCAAATCGCTCTGTTAT
ACGCTTCGGTGACAACGTATTTCTGTAAGACGCATTATACGCCAATCAAGTCGCTTTAAC
CCCTAACTAACCGAAGCGAAACATAGCGGTTTGATTGGTTGTAAAAGGGATGGTTGTGTA
GTAGTCTGTATTTGAAAAACCCTTTTAGTGAAGGTATATATGCCCACTATATATGACGCG
TTTATCGTCGCCACATACCCGTATAACTACAGGGGGTTGTGTTATAGTTCCCTTCATTCC
ATCTCGCTTCAATCCGCCGCTAAAACGCACCCTGTGCCAAATTAATGCGGAACTGTGTTT
CACCATGTTGCAATATTAGTTGTGTGAGTACGCGAATAAATATTC
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[194-253] 14.256 - T[254-316] 11.494 |
| SMART |
Znf_LIM (IPR001781) - T[195-246] 1.6E-12 - T[254-309] 1.3E-16 |
| Pfam |
Znf_LIM (IPR001781) - T[196-251] 7.0E-13 - T[255-312] 6.4E-17 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[255-290] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[318-384] 4.28E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[322-382] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[324-386] 1.5E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[325-383] 6.95819E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[325-381] 9.5E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[357-380] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 71.226 % | 332 | 4.94E-109 |
| LHX3_HUMAN | 72.642 % | 335 | 5.31E-110 |
| LHX5_HUMAN | 42.8 % | 229 | 2.75E-69 |