- Region 'REG00001208' >
- Transcript 'Haaura.CG.MTP2014.S7...' >
- Transcript 'Mooccu.CG.ELv1_2.S62...' >
- Transcript 'Moocci.CG.ELv1_2.S19...' >
- Transcript 'KH2012:KH.S215.4.v1....'
Transcript Model
Transcript Id
KH2012:KH.S215.4.v1.R.nonSL3-1
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
KhS215 [100,233 / 105,573]
Amino acid sequence
Length: 517
>KH.S215.4.v1.R.nonSL3-1
ARRRDCIPLLRTIDQFVTVNSTIKMILDTKALDELTNLPSPGNGMTSRIMTSRFHPYAKV
SKTSGMKSPTCGDSGAVVPPILASRPEVVGWQMEVETHVTEDYSDVLLVLSKIPKCTGCD
HHIFDRYILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSYVYCKEDFFKRFGTKCSGCEL
AIPPTQVVRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDYEHAKSRDLDM
DNGIKRPRTTITAKQLETLKIAYNQSPKPARHVREQLSSDTGLDMRVVQVWFQNRRAKEK
RLKKDTGRQRWGELFRSGAPSSGPHCRPNPDSPPSGGKRRVGGHSNRKRPSSSPGGTRIA
IPIPSSIQSPGRAPTNGQIESNFIAPEHNAPPHDGIMMGESPCFAPGEVPYPQQSSNHAY
LSPGSIPDMGGFPNLTRNYDYVDGPQILGPGMAPIMKPPTNNAIPNYYVTSPQMHHNQHQ
KNDCDVISESSGHSNLSDLSSSPRSWLGELDHVTHFQ
Nucleotide sequence
Length: 2,379
>KH2012:KH.S215.4.v1.R.nonSL3-1
CTGCGCGACGTCGCGATTGTATTCCATTGTTAAGAACAATCGATCAATTTGTTACAGTTA
ATTCTACAATTAAAATGATTCTCGATACTAAAGCGCTCGATGAACTTACGAACCTGCCGT
CGCCAGGTAACGGTATGACGTCAAGAATCATGACGTCGCGATTTCACCCGTACGCGAAAG
TTTCGAAAACATCGGGTATGAAATCTCCCACCTGCGGGGATTCGGGGGCCGTTGTCCCGC
CGATATTGGCTTCGCGACCTGAGGTCGTCGGTTGGCAAATGGAAGTCGAAACGCACGTCA
CAGAAGATTATAGTGACGTTTTGTTAGTTCTTTCCAAGATACCAAAATGCACCGGATGCG
ACCACCATATATTCGACCGGTATATTCTCAAAGTACAGGACAAACCTTGGCATTCACAAT
GTTTAAAATGCAACGACTGTGGGCGACAACTGACCGATAAATGTTTTTCTCGCGGTAGTT
ACGTTTACTGCAAGGAAGATTTCTTCAAGAGGTTCGGCACCAAATGCTCCGGTTGCGAAC
TCGCCATTCCCCCCACACAAGTGGTTAGGAGGGCACAGGACAACGTGTACCATCTAGAAT
GCTTCAGATGTTTCATGTGTAGTGAGCAATTGGGCACCGGGGACCAATTCTATTTGCTGG
ATGATAGTCGGCTTGTGTGTAAGAAAGATTACGAACATGCAAAGTCAAGAGATCTTGACA
TGGACAACGGTATAAAGCGACCCCGCACCACTATCACAGCTAAGCAACTGGAAACACTGA
AGATCGCTTACAATCAAAGCCCGAAACCTGCTCGCCACGTGAGGGAGCAGCTGAGCTCGG
ACACCGGGTTAGACATGAGAGTAGTTCAGGTATGGTTTCAAAACAGAAGGGCGAAAGAAA
AACGTTTAAAGAAAGACACAGGCCGACAACGTTGGGGAGAGCTATTCCGATCAGGGGCGC
CGTCTAGTGGCCCTCATTGTCGACCAAACCCAGACTCCCCGCCCAGCGGTGGTAAGCGTC
GTGTTGGTGGCCATAGCAACCGTAAGCGGCCCTCTAGCTCTCCTGGTGGCACACGTATAG
CTATCCCGATACCATCGTCGATTCAAAGCCCTGGTAGGGCGCCCACTAACGGACAAATTG
AATCCAACTTTATTGCTCCCGAGCACAATGCGCCACCTCACGACGGTATCATGATGGGTG
AATCCCCTTGCTTTGCACCTGGGGAAGTCCCGTACCCGCAACAATCTTCCAACCATGCTT
ATCTATCCCCTGGTAGTATTCCCGACATGGGGGGTTTCCCCAACCTGACACGAAACTACG
ATTACGTAGACGGCCCCCAAATATTGGGACCAGGAATGGCGCCTATCATGAAACCCCCCA
CCAACAACGCGATACCGAATTATTACGTCACAAGCCCACAAATGCATCACAATCAACACC
AGAAAAACGATTGTGACGTCATATCCGAAAGTAGCGGTCACTCGAACCTGAGCGATCTAT
CTTCAAGTCCAAGGTCATGGCTGGGTGAACTTGACCACGTGACACATTTCCAATAACTCG
TTCCCCTAGAAAAGTTTTCACTGTGATTTCTATGCCGCCCGTACAATTATTAGGGTTGGG
TTAATTATTATTGAAGGTATCCGCTATTGAGAAAATATCCAGAGTTTTTGACCCCAACTT
CCCTTCTCCAACCTTCAACCCCCAATTTCTGACCTGTTACCCGTTACCTATTACCCCTAA
CTCCTATTCCTAACCCCAATTGCAAAGTTTCGCAATTCCGATGATTGAGACCAAATATTC
GCGGTAATTTGACCCCGAAATATCTGGCAAAGTAACTTTCTTCTATGCACGCATGACTTT
ATTGCAAAACGGATTTTCTTAAAGCGGGTGCGTTCTATGATATATATCTCGCTAAATTCT
CGTCGTATTTGGGACTTTTACACCCCCATTAAAGTTACAATGGGTATTTATACAGATATC
TACAAACTATTACGCATCCATCCCCGCTGTTAACCAATCAAATCGCTCTGTTATACGCTT
CGGTGACAACGTATTTCTGTAAGACGCATTATACGCCAATCAAGTCGCTTTAACCCCTAA
CTAACCGAAGCGAAACATAGCGGTTTGATTGGTTGTAAAAGGGATGGTTGTGTAGTAGTC
TGTATTTGAAAAACCCTTTTAGTGAAGGTATATATGCCCACTATATATGACGCGTTTATC
GTCGCCACATACCCGTATAACTACAGGGGGTTGTGTTATAGTTCCCTTCATTCCATCTCG
CTTCAATCCGCCGCTAAAACGCACCCTGTGCCAAATTAATGCGGAACTGTGTTTCACCAT
GTTGCAATATTAGTTGTGTGAGTACGCGAATAAATATTC
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[114-173] 14.256 - T[174-236] 11.494 |
| SMART |
Znf_LIM (IPR001781) - T[115-166] 1.6E-12 - T[174-229] 1.3E-16 |
| Pfam |
Znf_LIM (IPR001781) - T[116-171] 5.7E-13 - T[175-232] 5.3E-17 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[175-210] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[238-304] 3.55E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[242-302] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[244-306] 1.5E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[245-301] 7.8E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[245-303] 3.34544E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[277-300] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.561 % | 332 | 4.98E-110 |
| LHX3_HUMAN | 47.277 % | 334 | 1.16E-110 |
| LHX5_HUMAN | 42.8 % | 227 | 3.06E-69 |