- Transcript 'KH2012:KH.S215.4.v1....'
Transcript Model
Transcript Id
KH2012:KH.S215.4.v1.A.nonSL6-1
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
KhS215 [100,254 / 105,573]
Amino acid sequence
Length: 510
>KH.S215.4.v1.A.nonSL6-1
PLLRTIDQFVTVNSTIKMILDTKALDELTNLPSPGNGMTSRIMTSRFHPYAKVSKTSGMK
SPTCGDSGAVVPPILASRPEVVGWQMEVETHVTEDYSDVLLVLSKIPKCTGCDHHIFDRY
ILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSYVYCKEDFFKRFGTKCSGCELAIPPTQV
VRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDYEHAKSRDLDMDNGIKRP
RTTITAKQLETLKIAYNQSPKPARHVREQLSSDTGLDMRVVQVWFQNRRAKEKRLKKDTG
RQRWGELFRSGAPSSGPHCRPNPDSPPSGGKRRVGGHSNRKRPSSSPGGTRIAIPIPSSI
QSPGRAPTNGQIESNFIAPEHNAPPHDGIMMGESPCFAPGEVPYPQQSSNHAYLSPGSIP
DMGGFPNLTRNYDYVDGPQILGPGMAPIMKPPTNNAIPNYYVTSPQMHHNQHQKNDCDVI
SESSGHSNLSDLSSSPRSWLGELDHVTHFQ
Nucleotide sequence
Length: 2,358
>KH2012:KH.S215.4.v1.A.nonSL6-1
TTCCATTGTTAAGAACAATCGATCAATTTGTTACAGTTAATTCTACAATTAAAATGATTC
TCGATACTAAAGCGCTCGATGAACTTACGAACCTGCCGTCGCCAGGTAACGGTATGACGT
CAAGAATCATGACGTCGCGATTTCACCCGTACGCGAAAGTTTCGAAAACATCGGGTATGA
AATCTCCCACCTGCGGGGATTCGGGGGCCGTTGTCCCGCCGATATTGGCTTCGCGACCTG
AGGTCGTCGGTTGGCAAATGGAAGTCGAAACGCACGTCACAGAAGATTATAGTGACGTTT
TGTTAGTTCTTTCCAAGATACCAAAATGCACCGGATGCGACCACCATATATTCGACCGGT
ATATTCTCAAAGTACAGGACAAACCTTGGCATTCACAATGTTTAAAATGCAACGACTGTG
GGCGACAACTGACCGATAAATGTTTTTCTCGCGGTAGTTACGTTTACTGCAAGGAAGATT
TCTTCAAGAGGTTCGGCACCAAATGCTCCGGTTGCGAACTCGCCATTCCCCCCACACAAG
TGGTTAGGAGGGCACAGGACAACGTGTACCATCTAGAATGCTTCAGATGTTTCATGTGTA
GTGAGCAATTGGGCACCGGGGACCAATTCTATTTGCTGGATGATAGTCGGCTTGTGTGTA
AGAAAGATTACGAACATGCAAAGTCAAGAGATCTTGACATGGACAACGGTATAAAGCGAC
CCCGCACCACTATCACAGCTAAGCAACTGGAAACACTGAAGATCGCTTACAATCAAAGCC
CGAAACCTGCTCGCCACGTGAGGGAGCAGCTGAGCTCGGACACCGGGTTAGACATGAGAG
TAGTTCAGGTATGGTTTCAAAACAGAAGGGCGAAAGAAAAACGTTTAAAGAAAGACACAG
GCCGACAACGTTGGGGAGAGCTATTCCGATCAGGGGCGCCGTCTAGTGGCCCTCATTGTC
GACCAAACCCAGACTCCCCGCCCAGCGGTGGTAAGCGTCGTGTTGGTGGCCATAGCAACC
GTAAGCGGCCCTCTAGCTCTCCTGGTGGCACACGTATAGCTATCCCGATACCATCGTCGA
TTCAAAGCCCTGGTAGGGCGCCCACTAACGGACAAATTGAATCCAACTTTATTGCTCCCG
AGCACAATGCGCCACCTCACGACGGTATCATGATGGGTGAATCCCCTTGCTTTGCACCTG
GGGAAGTCCCGTACCCGCAACAATCTTCCAACCATGCTTATCTATCCCCTGGTAGTATTC
CCGACATGGGGGGTTTCCCCAACCTGACACGAAACTACGATTACGTAGACGGCCCCCAAA
TATTGGGACCAGGAATGGCGCCTATCATGAAACCCCCCACCAACAACGCGATACCGAATT
ATTACGTCACAAGCCCACAAATGCATCACAATCAACACCAGAAAAACGATTGTGACGTCA
TATCCGAAAGTAGCGGTCACTCGAACCTGAGCGATCTATCTTCAAGTCCAAGGTCATGGC
TGGGTGAACTTGACCACGTGACACATTTCCAATAACTCGTTCCCCTAGAAAAGTTTTCAC
TGTGATTTCTATGCCGCCCGTACAATTATTAGGGTTGGGTTAATTATTATTGAAGGTATC
CGCTATTGAGAAAATATCCAGAGTTTTTGACCCCAACTTCCCTTCTCCAACCTTCAACCC
CCAATTTCTGACCTGTTACCCGTTACCTATTACCCCTAACTCCTATTCCTAACCCCAATT
GCAAAGTTTCGCAATTCCGATGATTGAGACCAAATATTCGCGGTAATTTGACCCCGAAAT
ATCTGGCAAAGTAACTTTCTTCTATGCACGCATGACTTTATTGCAAAACGGATTTTCTTA
AAGCGGGTGCGTTCTATGATATATATCTCGCTAAATTCTCGTCGTATTTGGGACTTTTAC
ACCCCCATTAAAGTTACAATGGGTATTTATACAGATATCTACAAACTATTACGCATCCAT
CCCCGCTGTTAACCAATCAAATCGCTCTGTTATACGCTTCGGTGACAACGTATTTCTGTA
AGACGCATTATACGCCAATCAAGTCGCTTTAACCCCTAACTAACCGAAGCGAAACATAGC
GGTTTGATTGGTTGTAAAAGGGATGGTTGTGTAGTAGTCTGTATTTGAAAAACCCTTTTA
GTGAAGGTATATATGCCCACTATATATGACGCGTTTATCGTCGCCACATACCCGTATAAC
TACAGGGGGTTGTGTTATAGTTCCCTTCATTCCATCTCGCTTCAATCCGCCGCTAAAACG
CACCCTGTGCCAAATTAATGCGGAACTGTGTTTCACCATGTTGCAATATTAGTTGTGTGA
GTACGCGAATAAATATTC
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[107-166] 14.256 - T[167-229] 11.494 |
| SMART |
Znf_LIM (IPR001781) - T[108-159] 1.6E-12 - T[167-222] 1.3E-16 |
| Pfam |
Znf_LIM (IPR001781) - T[109-164] 5.6E-13 - T[168-225] 5.2E-17 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[168-203] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[231-297] 3.46E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[235-295] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[237-299] 1.5E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[238-294] 7.7E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[238-296] 2.42406E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[270-293] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.561 % | 332 | 2.23E-110 |
| LHX3_HUMAN | 47.277 % | 333 | 1.3E-110 |
| LHX5_HUMAN | 42.8 % | 227 | 2.19E-69 |