Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C7.157.v1....'
  2. Transcript 'KH2012:KH.S215.4.v1....'

Transcript Model

Transcript Id

KH2012:KH.S215.4.v1.A.nonSL6-1

Possible name(s)

LHX3; LHX4; LHX5

Location

KhS215 [100,254 / 105,573]

Sequences

Amino acid sequence

Length: 510

>KH.S215.4.v1.A.nonSL6-1
PLLRTIDQFVTVNSTIKMILDTKALDELTNLPSPGNGMTSRIMTSRFHPYAKVSKTSGMK
SPTCGDSGAVVPPILASRPEVVGWQMEVETHVTEDYSDVLLVLSKIPKCTGCDHHIFDRY
ILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSYVYCKEDFFKRFGTKCSGCELAIPPTQV
VRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDYEHAKSRDLDMDNGIKRP
RTTITAKQLETLKIAYNQSPKPARHVREQLSSDTGLDMRVVQVWFQNRRAKEKRLKKDTG
RQRWGELFRSGAPSSGPHCRPNPDSPPSGGKRRVGGHSNRKRPSSSPGGTRIAIPIPSSI
QSPGRAPTNGQIESNFIAPEHNAPPHDGIMMGESPCFAPGEVPYPQQSSNHAYLSPGSIP
DMGGFPNLTRNYDYVDGPQILGPGMAPIMKPPTNNAIPNYYVTSPQMHHNQHQKNDCDVI
SESSGHSNLSDLSSSPRSWLGELDHVTHFQ

Nucleotide sequence

Length: 2,358

>KH2012:KH.S215.4.v1.A.nonSL6-1
TTCCATTGTTAAGAACAATCGATCAATTTGTTACAGTTAATTCTACAATTAAAATGATTC
TCGATACTAAAGCGCTCGATGAACTTACGAACCTGCCGTCGCCAGGTAACGGTATGACGT
CAAGAATCATGACGTCGCGATTTCACCCGTACGCGAAAGTTTCGAAAACATCGGGTATGA
AATCTCCCACCTGCGGGGATTCGGGGGCCGTTGTCCCGCCGATATTGGCTTCGCGACCTG
AGGTCGTCGGTTGGCAAATGGAAGTCGAAACGCACGTCACAGAAGATTATAGTGACGTTT
TGTTAGTTCTTTCCAAGATACCAAAATGCACCGGATGCGACCACCATATATTCGACCGGT
ATATTCTCAAAGTACAGGACAAACCTTGGCATTCACAATGTTTAAAATGCAACGACTGTG
GGCGACAACTGACCGATAAATGTTTTTCTCGCGGTAGTTACGTTTACTGCAAGGAAGATT
TCTTCAAGAGGTTCGGCACCAAATGCTCCGGTTGCGAACTCGCCATTCCCCCCACACAAG
TGGTTAGGAGGGCACAGGACAACGTGTACCATCTAGAATGCTTCAGATGTTTCATGTGTA
GTGAGCAATTGGGCACCGGGGACCAATTCTATTTGCTGGATGATAGTCGGCTTGTGTGTA
AGAAAGATTACGAACATGCAAAGTCAAGAGATCTTGACATGGACAACGGTATAAAGCGAC
CCCGCACCACTATCACAGCTAAGCAACTGGAAACACTGAAGATCGCTTACAATCAAAGCC
CGAAACCTGCTCGCCACGTGAGGGAGCAGCTGAGCTCGGACACCGGGTTAGACATGAGAG
TAGTTCAGGTATGGTTTCAAAACAGAAGGGCGAAAGAAAAACGTTTAAAGAAAGACACAG
GCCGACAACGTTGGGGAGAGCTATTCCGATCAGGGGCGCCGTCTAGTGGCCCTCATTGTC
GACCAAACCCAGACTCCCCGCCCAGCGGTGGTAAGCGTCGTGTTGGTGGCCATAGCAACC
GTAAGCGGCCCTCTAGCTCTCCTGGTGGCACACGTATAGCTATCCCGATACCATCGTCGA
TTCAAAGCCCTGGTAGGGCGCCCACTAACGGACAAATTGAATCCAACTTTATTGCTCCCG
AGCACAATGCGCCACCTCACGACGGTATCATGATGGGTGAATCCCCTTGCTTTGCACCTG
GGGAAGTCCCGTACCCGCAACAATCTTCCAACCATGCTTATCTATCCCCTGGTAGTATTC
CCGACATGGGGGGTTTCCCCAACCTGACACGAAACTACGATTACGTAGACGGCCCCCAAA
TATTGGGACCAGGAATGGCGCCTATCATGAAACCCCCCACCAACAACGCGATACCGAATT
ATTACGTCACAAGCCCACAAATGCATCACAATCAACACCAGAAAAACGATTGTGACGTCA
TATCCGAAAGTAGCGGTCACTCGAACCTGAGCGATCTATCTTCAAGTCCAAGGTCATGGC
TGGGTGAACTTGACCACGTGACACATTTCCAATAACTCGTTCCCCTAGAAAAGTTTTCAC
TGTGATTTCTATGCCGCCCGTACAATTATTAGGGTTGGGTTAATTATTATTGAAGGTATC
CGCTATTGAGAAAATATCCAGAGTTTTTGACCCCAACTTCCCTTCTCCAACCTTCAACCC
CCAATTTCTGACCTGTTACCCGTTACCTATTACCCCTAACTCCTATTCCTAACCCCAATT
GCAAAGTTTCGCAATTCCGATGATTGAGACCAAATATTCGCGGTAATTTGACCCCGAAAT
ATCTGGCAAAGTAACTTTCTTCTATGCACGCATGACTTTATTGCAAAACGGATTTTCTTA
AAGCGGGTGCGTTCTATGATATATATCTCGCTAAATTCTCGTCGTATTTGGGACTTTTAC
ACCCCCATTAAAGTTACAATGGGTATTTATACAGATATCTACAAACTATTACGCATCCAT
CCCCGCTGTTAACCAATCAAATCGCTCTGTTATACGCTTCGGTGACAACGTATTTCTGTA
AGACGCATTATACGCCAATCAAGTCGCTTTAACCCCTAACTAACCGAAGCGAAACATAGC
GGTTTGATTGGTTGTAAAAGGGATGGTTGTGTAGTAGTCTGTATTTGAAAAACCCTTTTA
GTGAAGGTATATATGCCCACTATATATGACGCGTTTATCGTCGCCACATACCCGTATAAC
TACAGGGGGTTGTGTTATAGTTCCCTTCATTCCATCTCGCTTCAATCCGCCGCTAAAACG
CACCCTGTGCCAAATTAATGCGGAACTGTGTTTCACCATGTTGCAATATTAGTTGTGTGA
GTACGCGAATAAATATTC

InterProScan

ProSiteProfiles
Znf_LIM (IPR001781) - T[107-166] 14.256 - T[167-229] 11.494
SMART
Znf_LIM (IPR001781) - T[108-159] 1.6E-12 - T[167-222] 1.3E-16
Pfam
Znf_LIM (IPR001781) - T[109-164] 5.6E-13 - T[168-225] 5.2E-17
ProSitePatterns
Znf_LIM (IPR001781) - T[168-203] .
SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[231-297] 3.46E-19
ProSiteProfiles
Homeobox_dom (IPR001356) - T[235-295] 17.41
SMART
Homeobox_dom (IPR001356) - T[237-299] 1.5E-21
Pfam
Homeobox_dom (IPR001356) - T[238-294] 7.7E-20
CDD
Homeobox_dom (IPR001356) - T[238-296] 2.42406E-20
ProSitePatterns
Homeobox_CS (IPR017970) - T[270-293] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LHX4_HUMAN 70.561 % 332 2.23E-110
LHX3_HUMAN 47.277 % 333 1.3E-110
LHX5_HUMAN 42.8 % 227 2.19E-69