- Clone 'AHC0AAA173YG02' >
- Region 'REG00000457' >
- Transcript 'KH2012:KH.S215.4.v1....'
Transcript Model
Transcript Id
KH2012:KH.S215.4.v1.A.nonSL5-1
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
KhS215 [100,250 / 105,573]
Amino acid sequence
Length: 512
>KH.S215.4.v1.A.nonSL5-1
CIPLLRTIDQFVTVNSTIKMILDTKALDELTNLPSPGNGMTSRIMTSRFHPYAKVSKTSG
MKSPTCGDSGAVVPPILASRPEVVGWQMEVETHVTEDYSDVLLVLSKIPKCTGCDHHIFD
RYILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSYVYCKEDFFKRFGTKCSGCELAIPPT
QVVRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDYEHAKSRDLDMDNGIK
RPRTTITAKQLETLKIAYNQSPKPARHVREQLSSDTGLDMRVVQVWFQNRRAKEKRLKKD
TGRQRWGELFRSGAPSSGPHCRPNPDSPPSGGKRRVGGHSNRKRPSSSPGGTRIAIPIPS
SIQSPGRAPTNGQIESNFIAPEHNAPPHDGIMMGESPCFAPGEVPYPQQSSNHAYLSPGS
IPDMGGFPNLTRNYDYVDGPQILGPGMAPIMKPPTNNAIPNYYVTSPQMHHNQHQKNDCD
VISESSGHSNLSDLSSSPRSWLGELDHVTHFQ
Nucleotide sequence
Length: 2,362
>KH2012:KH.S215.4.v1.A.nonSL5-1
TGTATTCCATTGTTAAGAACAATCGATCAATTTGTTACAGTTAATTCTACAATTAAAATG
ATTCTCGATACTAAAGCGCTCGATGAACTTACGAACCTGCCGTCGCCAGGTAACGGTATG
ACGTCAAGAATCATGACGTCGCGATTTCACCCGTACGCGAAAGTTTCGAAAACATCGGGT
ATGAAATCTCCCACCTGCGGGGATTCGGGGGCCGTTGTCCCGCCGATATTGGCTTCGCGA
CCTGAGGTCGTCGGTTGGCAAATGGAAGTCGAAACGCACGTCACAGAAGATTATAGTGAC
GTTTTGTTAGTTCTTTCCAAGATACCAAAATGCACCGGATGCGACCACCATATATTCGAC
CGGTATATTCTCAAAGTACAGGACAAACCTTGGCATTCACAATGTTTAAAATGCAACGAC
TGTGGGCGACAACTGACCGATAAATGTTTTTCTCGCGGTAGTTACGTTTACTGCAAGGAA
GATTTCTTCAAGAGGTTCGGCACCAAATGCTCCGGTTGCGAACTCGCCATTCCCCCCACA
CAAGTGGTTAGGAGGGCACAGGACAACGTGTACCATCTAGAATGCTTCAGATGTTTCATG
TGTAGTGAGCAATTGGGCACCGGGGACCAATTCTATTTGCTGGATGATAGTCGGCTTGTG
TGTAAGAAAGATTACGAACATGCAAAGTCAAGAGATCTTGACATGGACAACGGTATAAAG
CGACCCCGCACCACTATCACAGCTAAGCAACTGGAAACACTGAAGATCGCTTACAATCAA
AGCCCGAAACCTGCTCGCCACGTGAGGGAGCAGCTGAGCTCGGACACCGGGTTAGACATG
AGAGTAGTTCAGGTATGGTTTCAAAACAGAAGGGCGAAAGAAAAACGTTTAAAGAAAGAC
ACAGGCCGACAACGTTGGGGAGAGCTATTCCGATCAGGGGCGCCGTCTAGTGGCCCTCAT
TGTCGACCAAACCCAGACTCCCCGCCCAGCGGTGGTAAGCGTCGTGTTGGTGGCCATAGC
AACCGTAAGCGGCCCTCTAGCTCTCCTGGTGGCACACGTATAGCTATCCCGATACCATCG
TCGATTCAAAGCCCTGGTAGGGCGCCCACTAACGGACAAATTGAATCCAACTTTATTGCT
CCCGAGCACAATGCGCCACCTCACGACGGTATCATGATGGGTGAATCCCCTTGCTTTGCA
CCTGGGGAAGTCCCGTACCCGCAACAATCTTCCAACCATGCTTATCTATCCCCTGGTAGT
ATTCCCGACATGGGGGGTTTCCCCAACCTGACACGAAACTACGATTACGTAGACGGCCCC
CAAATATTGGGACCAGGAATGGCGCCTATCATGAAACCCCCCACCAACAACGCGATACCG
AATTATTACGTCACAAGCCCACAAATGCATCACAATCAACACCAGAAAAACGATTGTGAC
GTCATATCCGAAAGTAGCGGTCACTCGAACCTGAGCGATCTATCTTCAAGTCCAAGGTCA
TGGCTGGGTGAACTTGACCACGTGACACATTTCCAATAACTCGTTCCCCTAGAAAAGTTT
TCACTGTGATTTCTATGCCGCCCGTACAATTATTAGGGTTGGGTTAATTATTATTGAAGG
TATCCGCTATTGAGAAAATATCCAGAGTTTTTGACCCCAACTTCCCTTCTCCAACCTTCA
ACCCCCAATTTCTGACCTGTTACCCGTTACCTATTACCCCTAACTCCTATTCCTAACCCC
AATTGCAAAGTTTCGCAATTCCGATGATTGAGACCAAATATTCGCGGTAATTTGACCCCG
AAATATCTGGCAAAGTAACTTTCTTCTATGCACGCATGACTTTATTGCAAAACGGATTTT
CTTAAAGCGGGTGCGTTCTATGATATATATCTCGCTAAATTCTCGTCGTATTTGGGACTT
TTACACCCCCATTAAAGTTACAATGGGTATTTATACAGATATCTACAAACTATTACGCAT
CCATCCCCGCTGTTAACCAATCAAATCGCTCTGTTATACGCTTCGGTGACAACGTATTTC
TGTAAGACGCATTATACGCCAATCAAGTCGCTTTAACCCCTAACTAACCGAAGCGAAACA
TAGCGGTTTGATTGGTTGTAAAAGGGATGGTTGTGTAGTAGTCTGTATTTGAAAAACCCT
TTTAGTGAAGGTATATATGCCCACTATATATGACGCGTTTATCGTCGCCACATACCCGTA
TAACTACAGGGGGTTGTGTTATAGTTCCCTTCATTCCATCTCGCTTCAATCCGCCGCTAA
AACGCACCCTGTGCCAAATTAATGCGGAACTGTGTTTCACCATGTTGCAATATTAGTTGT
GTGAGTACGCGAATAAATATTC
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[109-168] 14.256 - T[169-231] 11.494 |
| SMART |
Znf_LIM (IPR001781) - T[110-161] 1.6E-12 - T[169-224] 1.3E-16 |
| Pfam |
Znf_LIM (IPR001781) - T[111-166] 5.7E-13 - T[170-227] 5.2E-17 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[170-205] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[233-299] 3.51E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[237-297] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[239-301] 1.5E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[240-298] 2.43731E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[240-296] 7.7E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[272-295] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.561 % | 332 | 3.78E-110 |
| LHX3_HUMAN | 47.277 % | 333 | 1.37E-110 |
| LHX5_HUMAN | 42.8 % | 227 | 2.26E-69 |