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TRANSCRIPT CARD

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  1. Region 'REG00001499' > 
  2. Molecular Tool 'Ci-FoxD::Macho1' > 
  3. Region 'REG00000026' > 
  4. > 
  5. Transcript 'KH2012:KH.S164.12.v1...'
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Transcript Model

Transcript Id

KH2012:KH.S164.12.v1.A.SL2-1

Possible name(s)

SOX14; SOX2; SOX21

Gene model

KH2012:KH.S164.12

Location

KhS164 [170,598 / 175,120]

Sequences

Amino acid sequence

Length: 321

>KH.S164.12.v1.A.SL2-1
HVIMESPDLQRETPSPVTSEEMTLKSGIDTGHVKRPMNAFMVWSRGQRRKMAQENPKMHN
SEISKRLGASWKLLNECEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKSLIKPKDRFAF
PLFPSSGMSSPTHDASTVSLAIQQAAAAAHLNMDPIVVEKARAAAAAAFYSTSQSLTTTS
FPSLNPLSMTSQSNAVSLAAAITQSRLAAVAAARDLGTPNSMYSPSNGLYSPPATTGASR
CGSLLHSPPSPGAAAMAAAVMNSAYVMNTPGAGSWSPSLPSPTLSMQNPFAYILVPGSSP
FPASPLKSGLDYFSPLPLPAM

Nucleotide sequence

Length: 3,005

>KH2012:KH.S164.12.v1.A.SL2-1
CCTGTCGTATAACTTATATGACTGAAATTTCACGCGATACTCAACTAGTGCACTGTGTTG
ATCTCGATTCTAAATTCATCGGCTACGAATAACCTTCTTTTACGTCACCACTGTATAATC
TACTCGACGACCCCAACTGACGTCATAAATTCGTGACGTCACTGCAAAGTTTCAAGATAT
TCTAACACGTTATTATGGAAAGCCCCGATCTTCAGAGGGAAACTCCCAGTCCGGTGACGT
CAGAGGAAATGACGTTGAAATCCGGCATCGACACAGGCCACGTTAAGCGACCAATGAATG
CATTCATGGTTTGGTCGCGAGGACAACGACGAAAAATGGCCCAAGAAAATCCAAAAATGC
ATAACTCCGAGATCTCAAAGAGACTCGGTGCTTCGTGGAAGCTTCTCAACGAGTGCGAGA
AGCGGCCATTCATCGACGAAGCAAAACGTCTCCGTGCTCTTCATATGAAGGAACATCCGG
ACTACAAATACAGACCCCGGAGGAAACCCAAAAGCCTCATCAAGCCAAAAGATCGCTTTG
CTTTTCCTCTCTTCCCAAGCTCGGGAATGAGTTCTCCAACACACGACGCATCCACCGTAT
CATTAGCCATACAACAGGCAGCAGCTGCTGCTCATCTCAACATGGACCCTATTGTGGTGG
AGAAGGCAAGAGCTGCGGCGGCCGCCGCGTTTTACTCGACGTCACAATCCTTAACGACGA
CTTCATTCCCAAGTCTGAACCCCCTCAGTATGACGTCACAATCGAACGCAGTTAGCCTCG
CAGCAGCCATCACTCAAAGCAGGCTTGCAGCTGTTGCAGCGGCACGTGACCTAGGTACAC
CAAACTCGATGTACTCACCATCCAACGGTCTCTACTCTCCTCCTGCTACTACAGGCGCCT
CCCGATGTGGATCACTACTTCACTCGCCTCCGTCTCCAGGAGCAGCAGCCATGGCAGCCG
CTGTTATGAACAGCGCTTATGTGATGAACACACCAGGTGCTGGCTCGTGGTCGCCTTCCC
TGCCAAGCCCAACCCTATCAATGCAGAATCCCTTTGCCTACATACTGGTGCCAGGGTCTT
CGCCCTTCCCAGCCAGCCCGCTAAAAAGTGGACTCGACTACTTTTCCCCGCTTCCCTTAC
CGGCGATGTAGGCGGGCGGAAATCCGCCGAAAAGACCGGGCTCGGTCGGTAACCAGCAAG
TTCCTCTGATCGCGCGTGCGGCAAAGGCGAGGCGAATTCTTCTACAGGATAGACGCTAAA
TATCTGCTCTCGGATCAGCCAATAAGTTTCCAATATTGTACTTGTGTAAACAGGTGGTGT
TTATAACCTTTCGCTACGATCCCAACTTACTGGGCTACTCGACTCGAATACTAACAATCG
CGGTACGATATTACTCGTTGTGGAATCACAAGGGTGAATTTTAAATGACGCGTGGTCCGA
GGTCAAGTGCTTAAAGTTTTATTGAAGGCGCGTGCCGTTGTCTGCCTACAGTCCTTATTG
AAGGTTTAGCATATAAACATGTCGGTTGCCAAAACACTGGTATACAGTCGCCTGGCAGCG
TCGTGTGTAATCAAAATGCTTTTTGCCTTCAAGTGCGTCCATATTACCAACGCGCATTAT
GATTGCCGTGCCGAAATGAATTTTAACCACAAGACCTTCAGGCCACCTTCTATATTACTG
TGTCCTCGACAAAGCGTTCTGCGCTGATAATAACCTCTTTTTGGTGGGTGACATTTTTTG
CTTCAATCTTGTTCATTATCTCAGTGTTTATTTACTACCCGCTATTCCGCGCTATTTGCA
AGCAGGCTCCAACTTAATTCTTGGCCAGCTTTCTCTGTACAAAGCCACGCGAATAATCGG
ATGAATGCGAATCAGCGCTTGTAAATCGACCTTGAATTAACCCATAACGTGCGCGGGACT
CCTTTGTTTCGCATTTTGTTATCAACACGTCAAAGCTACTTACACAATCTCACCGAAGAG
AATCTGGAAAGGCATGCCATACCACACCAAACCAACGCGATGCACCATCGACTAGAGGTC
GACTGTTTGTTGTGTGCACCAATGGCCACACCTAAACGCGGTTACTTGCTTTGCACGAAC
ATCGGCGCGCTGAGGTCGCTTTTAATTCAATTACCGTCAGGCGCTGAACTTCGCCGTTCC
GCTACACCGCTCATGCACACATCTCCGCTTATTTTCCGCCGTAAACATTCATCTTCAGCG
GAGTTGCGAATTCACTTTTAACCGACGACCTGTTTCAAAAACCTTAATTTTTTAAGGGGG
AAGACATCATTGTGCAAGGACGCGATATCGCACTAGATACCGGTGTGGATTTTCGGGCTA
ATCCTCGAATAATTCCGTTGCGTCGTTCACCGGCTGATACGCGGCCTACGATTTATTATT
CCCGAATAAGTGCCTTTGTTACAGCTCAAAGCGCGTTCGACGGATAGGAGGTTTAAGTTA
CAGCTTTATGACATCACAGACACCACAAGTTCGATCAGTTCGCTCGTGGAATACGCCCGC
GGCGTCCAAGCGCTCGAAATCTGTTTATTTTTACAAAGAAGAGCGAAATGCCCCAAAAGC
GTCGCAGCCTTCGCACGCAATCCGTCGCCTCGGTCGATTTTAATTAATATGAATCACCGG
CGTTGATTAGAACTTACCGCGGCGATTGAGTGCGATTATCCTCGCCGAATTTGTTCTTGT
CACGCGATCCAGTTCGGTAAAACAATACAGGCACTATCGCGCCCGCGTAACAATTACCAT
CATTGCAATTATCTTTACCGCGCTTTAGCTCTCTTCAGATCATTATAACGGTAACACTTT
AACCCTTTGAACCGCTTATAATACATCAGCCTGCGTTTTTTTTTCTGTTTTAAACCCCGC
TGCTACCAATATGCTGCAACAAAATCTCTCGTACTTCCGAACAAGTCGAATTTTTATTTA
AATCTTATTTTCTTTCTGCCGACGATGTTTTGAATAACGAAAAAATAAAATCGAAGAGCT
GACTC

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[19-105] 4.06E-29
Gene3D
HMG_box_dom_sf (IPR036910) - T[31-108] 1.8E-31
SMART
HMG_box_dom (IPR009071) - T[32-102] 1.2E-26
Pfam
HMG_box_dom (IPR009071) - T[33-101] 1.3E-26
ProSiteProfiles
HMG_box_dom (IPR009071) - T[33-101] 22.481

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX2_HUMAN 87.64 % 172 2.04E-51
SOX21_HUMAN 80 % 176 1.4E-53
SOX14_HUMAN 44.637 % 179 2.56E-55