- Transcript 'KH2012:KH.C9.53.v1.R...' >
- Molecular Tool 'FGF8/17/18>Pax3/7::WRPW (Stolfi 2011)' >
- Transcript 'Harore.CG.MTP2014.S9...' >
- Transcript 'KH2012:KH.S1404.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1404.1.v1.A.nonSL7-1
Possible name(s)
TBX19; TBX6; TBXT
Gene model
Location
KhS1404 [6,269 / 8,022]
Amino acid sequence
Length: 447
>KH.S1404.1.v1.A.nonSL7-1
SASYKPIMTSSDSKLAGMTSSESIETCAVKMALIEHGLWSRFHAFVNEMIVTKNGRRMFP
VLKTSITGLDPTAMYSVMLDFVPVDNNRWKYVNGEWIPGGKPEPHVSSCAYIHPDSPNFG
SHWMKQPVGFSRVKLTNKATGNPQQIMLNSLHKYEPRIHIMRVGGAESQQVVASHSFQET
RFIAVTAYQNEDVTSLKIKYNPFAKAFLDAKESRSGSENYFKDSTKAGSSQNYSRANTWT
ANQSNPTFNQCQYESGIPPFHYPIPNQPKTTRERRMSRTQRSHPYKPSTTQIYQDFQPTN
YPALPNDQWQSSIEGHELDEGHFSLEPVSVDDVTALGFDTPHQGFATNDLLSIEPSYSLD
YPQFTTTWSYPTNHMPGYVSNSPIRSLEQPEYFYRGYDVSQQNYVTMTSADVSNVTSSLY
ETPSPGVMQRPQEDFSIAYTPLTPPSL
Nucleotide sequence
Length: 1,411
>KH2012:KH.S1404.1.v1.A.nonSL7-1
TCAGTGCGAGTTACAAACCTATAATGACGTCATCAGATAGTAAGTTAGCAGGTATGACGT
CATCAGAATCAATTGAAACATGTGCAGTAAAGATGGCGCTAATAGAGCATGGTTTATGGT
CGAGGTTTCACGCGTTTGTCAACGAGATGATTGTGACAAAAAATGGACGACGAATGTTTC
CGGTTCTTAAAACATCGATTACGGGACTTGATCCAACTGCGATGTATTCCGTCATGCTTG
ACTTTGTACCCGTGGATAACAATAGATGGAAATATGTGAACGGTGAGTGGATCCCCGGGG
GAAAACCCGAACCCCATGTTTCGTCATGTGCTTATATTCACCCCGATTCACCCAACTTTG
GTTCGCACTGGATGAAACAACCCGTTGGTTTCAGTCGCGTCAAACTTACTAATAAAGCTA
CAGGGAACCCCCAGCAAATAATGTTGAACTCTCTGCATAAATACGAACCCAGGATCCACA
TCATGCGCGTTGGGGGCGCTGAATCGCAACAAGTCGTTGCCTCGCATTCATTTCAGGAGA
CAAGGTTCATTGCTGTTACTGCTTACCAAAACGAAGATGTTACTTCGCTCAAGATAAAAT
ATAATCCTTTCGCCAAAGCTTTCCTCGACGCAAAGGAGAGCCGCTCAGGGAGTGAAAATT
ATTTTAAAGATTCAACGAAAGCGGGTTCGTCGCAAAATTATTCGAGAGCGAACACATGGA
CGGCAAATCAAAGCAACCCAACATTCAATCAATGTCAGTATGAATCAGGGATTCCCCCAT
TCCATTACCCCATCCCAAACCAACCGAAAACAACAAGAGAGCGGCGCATGAGCCGCACAC
AAAGAAGCCATCCCTACAAACCATCCACAACGCAAATTTATCAAGATTTCCAACCAACCA
ATTACCCCGCCCTACCAAACGACCAATGGCAATCAAGTATCGAAGGTCATGAACTCGATG
AGGGACACTTTAGTCTCGAACCAGTCTCTGTAGATGACGTCACCGCCTTAGGATTCGACA
CCCCGCATCAGGGTTTTGCAACAAACGATCTTCTTTCAATAGAGCCTTCCTATTCGTTAG
ATTATCCTCAATTCACGACCACGTGGTCCTACCCGACCAATCACATGCCAGGATATGTTT
CAAACAGTCCAATCAGAAGCCTGGAACAACCGGAGTACTTTTATAGAGGCTATGACGTAT
CACAGCAAAATTACGTCACGATGACGTCAGCAGATGTTAGTAATGTGACGTCATCATTAT
ACGAAACTCCGTCACCGGGGGTCATGCAAAGGCCACAAGAAGATTTTTCAATCGCGTATA
CGCCGCTTACGCCACCTTCTTTGTGACGTCACAATGCGAATATAATTATCGATTGTTTCG
TGAAATAACATTAAAATATGAACACATGTTG
| PANTHER |
TF_T-box (IPR001699) - T[13-446] 8.9E-169 |
| Gene3D |
T-box_sf (IPR036960) - T[28-214] 7.6E-78 |
| SMART |
TF_T-box (IPR001699) - T[28-214] 1.1E-109 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[29-209] 4.47E-73 |
| CDD |
TF_T-box (IPR001699) - T[29-213] 5.26411E-107 |
| Pfam |
TF_T-box (IPR001699) - T[33-209] 2.6E-70 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[33-209] 71.443 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[38-57] . - T[112-130] . |
| PRINTS |
TF_T-box (IPR001699) - T[46-70] 3.0E-42 - T[111-124] 3.0E-42 - T[128-137] 3.0E-42 - T[147-161] 3.0E-42 - T[180-193] 3.0E-42 - T[201-209] 3.0E-42 |
| PRINTS |
TF_Brachyury (IPR002070) - T[91-111] 1.2E-20 - T[152-169] 1.2E-20 - T[205-215] 1.2E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 68.447 % | 294 | 9.21E-96 |
| TBX19_HUMAN | 55.39 % | 281 | 1.12E-90 |
| TBX6_HUMAN | 50 % | 193 | 1.04E-56 |