- Region 'REG00000043' >
- Transcript 'KH2012:KH.C1.1144.v1...' >
- Transcript 'Moocul.CG.ELv1_2.S10...' >
- Transcript 'KH2012:KH.S1404.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1404.1.v1.A.nonSL4-1
Possible name(s)
TBX19; TBX6; TBXT
Gene model
Location
KhS1404 [6,336 / 8,022]
Amino acid sequence
Length: 425
>KH.S1404.1.v1.A.nonSL4-1
SIETCAVKMALIEHGLWSRFHAFVNEMIVTKNGRRMFPVLKTSITGLDPTAMYSVMLDFV
PVDNNRWKYVNGEWIPGGKPEPHVSSCAYIHPDSPNFGSHWMKQPVGFSRVKLTNKATGN
PQQIMLNSLHKYEPRIHIMRVGGAESQQVVASHSFQETRFIAVTAYQNEDVTSLKIKYNP
FAKAFLDAKESRSGSENYFKDSTKAGSSQNYSRANTWTANQSNPTFNQCQYESGIPPFHY
PIPNQPKTTRERRMSRTQRSHPYKPSTTQIYQDFQPTNYPALPNDQWQSSIEGHELDEGH
FSLEPVSVDDVTALGFDTPHQGFATNDLLSIEPSYSLDYPQFTTTWSYPTNHMPGYVSNS
PIRSLEQPEYFYRGYDVSQQNYVTMTSADVSNVTSSLYETPSPGVMQRPQEDFSIAYTPL
TPPSL
Nucleotide sequence
Length: 1,344
>KH2012:KH.S1404.1.v1.A.nonSL4-1
ATCAATTGAAACATGTGCAGTAAAGATGGCGCTAATAGAGCATGGTTTATGGTCGAGGTT
TCACGCGTTTGTCAACGAGATGATTGTGACAAAAAATGGACGACGAATGTTTCCGGTTCT
TAAAACATCGATTACGGGACTTGATCCAACTGCGATGTATTCCGTCATGCTTGACTTTGT
ACCCGTGGATAACAATAGATGGAAATATGTGAACGGTGAGTGGATCCCCGGGGGAAAACC
CGAACCCCATGTTTCGTCATGTGCTTATATTCACCCCGATTCACCCAACTTTGGTTCGCA
CTGGATGAAACAACCCGTTGGTTTCAGTCGCGTCAAACTTACTAATAAAGCTACAGGGAA
CCCCCAGCAAATAATGTTGAACTCTCTGCATAAATACGAACCCAGGATCCACATCATGCG
CGTTGGGGGCGCTGAATCGCAACAAGTCGTTGCCTCGCATTCATTTCAGGAGACAAGGTT
CATTGCTGTTACTGCTTACCAAAACGAAGATGTTACTTCGCTCAAGATAAAATATAATCC
TTTCGCCAAAGCTTTCCTCGACGCAAAGGAGAGCCGCTCAGGGAGTGAAAATTATTTTAA
AGATTCAACGAAAGCGGGTTCGTCGCAAAATTATTCGAGAGCGAACACATGGACGGCAAA
TCAAAGCAACCCAACATTCAATCAATGTCAGTATGAATCAGGGATTCCCCCATTCCATTA
CCCCATCCCAAACCAACCGAAAACAACAAGAGAGCGGCGCATGAGCCGCACACAAAGAAG
CCATCCCTACAAACCATCCACAACGCAAATTTATCAAGATTTCCAACCAACCAATTACCC
CGCCCTACCAAACGACCAATGGCAATCAAGTATCGAAGGTCATGAACTCGATGAGGGACA
CTTTAGTCTCGAACCAGTCTCTGTAGATGACGTCACCGCCTTAGGATTCGACACCCCGCA
TCAGGGTTTTGCAACAAACGATCTTCTTTCAATAGAGCCTTCCTATTCGTTAGATTATCC
TCAATTCACGACCACGTGGTCCTACCCGACCAATCACATGCCAGGATATGTTTCAAACAG
TCCAATCAGAAGCCTGGAACAACCGGAGTACTTTTATAGAGGCTATGACGTATCACAGCA
AAATTACGTCACGATGACGTCAGCAGATGTTAGTAATGTGACGTCATCATTATACGAAAC
TCCGTCACCGGGGGTCATGCAAAGGCCACAAGAAGATTTTTCAATCGCGTATACGCCGCT
TACGCCACCTTCTTTGTGACGTCACAATGCGAATATAATTATCGATTGTTTCGTGAAATA
ACATTAAAATATGAACACATGTTG
| Gene3D |
T-box_sf (IPR036960) - T[6-192] 6.8E-78 |
| SMART |
TF_T-box (IPR001699) - T[6-192] 1.1E-109 |
| PANTHER |
TF_T-box (IPR001699) - T[6-424] 3.2E-168 |
| CDD |
TF_T-box (IPR001699) - T[7-191] 4.96947E-107 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[7-187] 3.98E-73 |
| Pfam |
TF_T-box (IPR001699) - T[11-187] 2.3E-70 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[11-187] 71.443 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[16-35] . - T[90-108] . |
| PRINTS |
TF_T-box (IPR001699) - T[24-48] 2.4E-42 - T[89-102] 2.4E-42 - T[106-115] 2.4E-42 - T[125-139] 2.4E-42 - T[158-171] 2.4E-42 - T[179-187] 2.4E-42 |
| PRINTS |
TF_Brachyury (IPR002070) - T[69-89] 1.1E-20 - T[130-147] 1.1E-20 - T[183-193] 1.1E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 68.447 % | 293 | 1.56E-95 |
| TBX19_HUMAN | 56.061 % | 281 | 1.45E-90 |
| TBX6_HUMAN | 50 % | 192 | 1.12E-56 |