- EST 'AHC0AAA232YP13_RM1' >
- Transcript 'KH2012:KH.S1266.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1266.1.v1.A.SL3-1
Possible name(s)
NPHS2; STOM; STOML1
Gene model
Location
KhS1266 [8,697 / 10,399]
Amino acid sequence
Length: 393
>KH.S1266.1.v1.A.SL3-1
LGVYKMSTFKYQPVKQYEEIDFRSHFTFSGDEKRIKNTFKTESTQTCFDCICTSFVKFFV
FLFFLVTFPISGFFCLKIAHQYERIIIYRLGRLIPIKGPGVVLVLPCIDHWKKVDMRTKA
FNVPPSKLCTSDGCIISIGAIVHFSIQDPRLMSLSVQNMNHSIRDASQGCMMNLLCKKTY
NDIKTKRQGLSYDLQVDINQSAKEWGLAVSRVELSDITLIMAPQNKTPAFMPMYGAPPPP
ETGDAFTGSGVDNFGGIAQFATQLFAQVANAQSQQANDAEPPTSSTMDNLLRVLKTAVNE
ELVQEVDTLYQFNITGIQDGNFFADLRTGSGVVGLGVCSESPDVTFSLSMSTLQKIIAGS
VTPYNAYIGGQLHMDGDTDKAMKLEKVVKDIKI
Nucleotide sequence
Length: 1,702
>KH2012:KH.S1266.1.v1.A.SL3-1
TTTTAGGTGTTTACAAAATGAGTACATTCAAATATCAACCTGTTAAGCAATATGAAGAAA
TTGATTTTCGATCTCATTTTACATTCAGTGGGGACGAAAAACGGATTAAAAATACCTTTA
AAACAGAAAGTACTCAAACTTGCTTTGATTGCATCTGCACCAGTTTCGTGAAGTTCTTTG
TGTTTTTATTTTTTTTAGTTACTTTTCCAATTTCTGGATTCTTTTGTTTGAAAATTGCTC
ACCAGTATGAAAGAATCATCATATATCGACTTGGGAGACTCATTCCAATTAAAGGTCCCG
GTGTTGTGCTGGTGTTGCCATGTATTGACCACTGGAAGAAAGTAGACATGAGAACAAAAG
CATTTAATGTGCCACCCTCCAAGCTATGTACAAGTGATGGCTGCATCATCTCCATTGGAG
CCATTGTTCATTTCAGTATTCAGGATCCTCGCTTAATGAGTTTGTCTGTTCAAAACATGA
ACCATTCTATTAGAGATGCTTCACAAGGCTGCATGATGAATTTGCTCTGCAAGAAAACTT
ACAACGACATAAAAACGAAGCGACAAGGTTTGTCATACGACCTACAAGTCGATATCAACC
AGTCAGCAAAGGAATGGGGTTTAGCTGTAAGCAGGGTTGAATTATCTGACATTACTTTAA
TTATGGCTCCACAGAATAAAACACCAGCATTCATGCCAATGTATGGAGCCCCACCGCCTC
CGGAAACAGGAGATGCATTCACAGGTTCGGGAGTGGATAATTTCGGGGGTATTGCTCAAT
TTGCAACGCAACTGTTCGCGCAAGTTGCCAATGCTCAATCTCAACAAGCAAATGATGCGG
AACCACCAACCAGTTCAACAATGGACAACTTGCTTCGTGTTTTAAAAACTGCAGTGAATG
AAGAACTTGTGCAAGAGGTTGATACACTTTATCAATTCAACATAACCGGTATACAAGATG
GAAATTTTTTCGCTGATTTAAGAACAGGATCTGGTGTGGTTGGTTTGGGTGTATGCAGCG
AGTCTCCTGATGTTACTTTTTCCCTATCTATGTCTACACTGCAAAAGATAATTGCAGGTT
CGGTAACTCCATATAATGCTTATATAGGTGGCCAGCTTCATATGGATGGGGACACAGACA
AAGCCATGAAACTTGAAAAAGTTGTGAAAGATATTAAAATATAAACTTATTTCGGAGTGA
AATAGTGATTAAAGGTATTGCAAATTATGCTTCACTGTGCACTTTATAAATGAGTTGCTT
GTTTTTTTACCTGTATACCTCTAAAACAGAATTTGGTAAATTGCTAAAACTCAAAACTAT
TGATGAATATTCTATCACTTTGTTCTTTAAATGAATAAAATGAGTTGTATATTTGTTATT
TTTATAATGGAAACCGTGGGGGAAATTTATATTTTCAAATGCAATTTTGTTGGGTTTTAT
CCACTTACTAGTGATAGTTATTACTATTCATAATGAAGCAATTGACAAGTAAAACTTCAA
AAATAATCTAAAAATTGTGGTTATTAATATGATCATGAAAGGCTATTTTTTATTGGCATA
ATAAATTTGAGAAATACAACATTCACTGTTTTCATTTGTTGCAAATGGCACTCCTGGCTC
TTTGGTGAGCAGTTCTAGCATCATACCCATGTTAGGTGTTGGTTGTTTGTACTATTGTCA
GTATGTGTCACCTGTTTTATCA
| PANTHER |
SLP1 (IPR028517) - T[34-392] 4.4E-129 |
| SMART |
Band_7 (IPR001107) - T[74-225] 3.9E-26 |
| Pfam |
Band_7 (IPR001107) - T[78-219] 2.4E-14 |
| PRINTS |
Stomatin_fam (IPR001972) - T[81-103] 3.4E-18 - T[128-149] 3.4E-18 - T[183-206] 3.4E-18 - T[207-225] 3.4E-18 |
| SUPERFAMILY |
Band_7/SPFH_dom_sf (IPR036013) - T[105-219] 2.35E-20 |
| Gene3D |
SCP2_sterol-bd_dom_sf (IPR036527) - T[282-392] 2.1E-22 |
| SUPERFAMILY |
SCP2_sterol-bd_dom_sf (IPR036527) - T[284-391] 1.72E-19 |
| Pfam |
SCP2_sterol-bd_dom (IPR003033) - T[289-389] 5.5E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STOM_HUMAN | 34.359 % | 142 | 1.21E-39 |
| PODO_HUMAN | 32.222 % | 125 | 2.21E-32 |
| STML1_HUMAN | 33.907 % | 234 | 1.31E-73 |