- Transcript 'KH2012:KH.C9.494.v6....' >
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- Transcript 'KH2012:KH.S1266.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1266.1.v1.A.nonSL5-1
Possible name(s)
NPHS2; STOM; STOML1
Gene model
Location
KhS1266 [8,720 / 10,399]
Amino acid sequence
Length: 386
>KH.S1266.1.v1.A.nonSL5-1
TFKYQPVKQYEEIDFRSHFTFSGDEKRIKNTFKTESTQTCFDCICTSFVKFFVFLFFLVT
FPISGFFCLKIAHQYERIIIYRLGRLIPIKGPGVVLVLPCIDHWKKVDMRTKAFNVPPSK
LCTSDGCIISIGAIVHFSIQDPRLMSLSVQNMNHSIRDASQGCMMNLLCKKTYNDIKTKR
QGLSYDLQVDINQSAKEWGLAVSRVELSDITLIMAPQNKTPAFMPMYGAPPPPETGDAFT
GSGVDNFGGIAQFATQLFAQVANAQSQQANDAEPPTSSTMDNLLRVLKTAVNEELVQEVD
TLYQFNITGIQDGNFFADLRTGSGVVGLGVCSESPDVTFSLSMSTLQKIIAGSVTPYNAY
IGGQLHMDGDTDKAMKLEKVVKDIKI
Nucleotide sequence
Length: 1,679
>KH2012:KH.S1266.1.v1.A.nonSL5-1
ACATTCAAATATCAACCTGTTAAGCAATATGAAGAAATTGATTTTCGATCTCATTTTACA
TTCAGTGGGGACGAAAAACGGATTAAAAATACCTTTAAAACAGAAAGTACTCAAACTTGC
TTTGATTGCATCTGCACCAGTTTCGTGAAGTTCTTTGTGTTTTTATTTTTTTTAGTTACT
TTTCCAATTTCTGGATTCTTTTGTTTGAAAATTGCTCACCAGTATGAAAGAATCATCATA
TATCGACTTGGGAGACTCATTCCAATTAAAGGTCCCGGTGTTGTGCTGGTGTTGCCATGT
ATTGACCACTGGAAGAAAGTAGACATGAGAACAAAAGCATTTAATGTGCCACCCTCCAAG
CTATGTACAAGTGATGGCTGCATCATCTCCATTGGAGCCATTGTTCATTTCAGTATTCAG
GATCCTCGCTTAATGAGTTTGTCTGTTCAAAACATGAACCATTCTATTAGAGATGCTTCA
CAAGGCTGCATGATGAATTTGCTCTGCAAGAAAACTTACAACGACATAAAAACGAAGCGA
CAAGGTTTGTCATACGACCTACAAGTCGATATCAACCAGTCAGCAAAGGAATGGGGTTTA
GCTGTAAGCAGGGTTGAATTATCTGACATTACTTTAATTATGGCTCCACAGAATAAAACA
CCAGCATTCATGCCAATGTATGGAGCCCCACCGCCTCCGGAAACAGGAGATGCATTCACA
GGTTCGGGAGTGGATAATTTCGGGGGTATTGCTCAATTTGCAACGCAACTGTTCGCGCAA
GTTGCCAATGCTCAATCTCAACAAGCAAATGATGCGGAACCACCAACCAGTTCAACAATG
GACAACTTGCTTCGTGTTTTAAAAACTGCAGTGAATGAAGAACTTGTGCAAGAGGTTGAT
ACACTTTATCAATTCAACATAACCGGTATACAAGATGGAAATTTTTTCGCTGATTTAAGA
ACAGGATCTGGTGTGGTTGGTTTGGGTGTATGCAGCGAGTCTCCTGATGTTACTTTTTCC
CTATCTATGTCTACACTGCAAAAGATAATTGCAGGTTCGGTAACTCCATATAATGCTTAT
ATAGGTGGCCAGCTTCATATGGATGGGGACACAGACAAAGCCATGAAACTTGAAAAAGTT
GTGAAAGATATTAAAATATAAACTTATTTCGGAGTGAAATAGTGATTAAAGGTATTGCAA
ATTATGCTTCACTGTGCACTTTATAAATGAGTTGCTTGTTTTTTTACCTGTATACCTCTA
AAACAGAATTTGGTAAATTGCTAAAACTCAAAACTATTGATGAATATTCTATCACTTTGT
TCTTTAAATGAATAAAATGAGTTGTATATTTGTTATTTTTATAATGGAAACCGTGGGGGA
AATTTATATTTTCAAATGCAATTTTGTTGGGTTTTATCCACTTACTAGTGATAGTTATTA
CTATTCATAATGAAGCAATTGACAAGTAAAACTTCAAAAATAATCTAAAAATTGTGGTTA
TTAATATGATCATGAAAGGCTATTTTTTATTGGCATAATAAATTTGAGAAATACAACATT
CACTGTTTTCATTTGTTGCAAATGGCACTCCTGGCTCTTTGGTGAGCAGTTCTAGCATCA
TACCCATGTTAGGTGTTGGTTGTTTGTACTATTGTCAGTATGTGTCACCTGTTTTATCA
| PANTHER |
SLP1 (IPR028517) - T[27-385] 4.4E-129 |
| SMART |
Band_7 (IPR001107) - T[67-218] 3.9E-26 |
| Pfam |
Band_7 (IPR001107) - T[71-212] 2.3E-14 |
| PRINTS |
Stomatin_fam (IPR001972) - T[74-96] 3.2E-18 - T[121-142] 3.2E-18 - T[176-199] 3.2E-18 - T[200-218] 3.2E-18 |
| SUPERFAMILY |
Band_7/SPFH_dom_sf (IPR036013) - T[98-212] 2.22E-20 |
| Gene3D |
SCP2_sterol-bd_dom_sf (IPR036527) - T[275-385] 2.1E-22 |
| SUPERFAMILY |
SCP2_sterol-bd_dom_sf (IPR036527) - T[277-384] 1.67E-19 |
| Pfam |
SCP2_sterol-bd_dom (IPR003033) - T[282-382] 5.3E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STOM_HUMAN | 34.359 % | 142 | 1.16E-39 |
| PODO_HUMAN | 32.222 % | 125 | 1.67E-32 |
| STML1_HUMAN | 33.827 % | 233 | 2.09E-73 |