- Transcript 'Cisavi.CG.ENS81.R14....' >
- Transcript 'KH2012:KH.S1266.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1266.1.v1.A.nonSL4-1
Possible name(s)
NPHS2; STOM; STOML1
Gene model
Location
KhS1266 [8,716 / 10,399]
Amino acid sequence
Length: 387
>KH.S1266.1.v1.A.nonSL4-1
STFKYQPVKQYEEIDFRSHFTFSGDEKRIKNTFKTESTQTCFDCICTSFVKFFVFLFFLV
TFPISGFFCLKIAHQYERIIIYRLGRLIPIKGPGVVLVLPCIDHWKKVDMRTKAFNVPPS
KLCTSDGCIISIGAIVHFSIQDPRLMSLSVQNMNHSIRDASQGCMMNLLCKKTYNDIKTK
RQGLSYDLQVDINQSAKEWGLAVSRVELSDITLIMAPQNKTPAFMPMYGAPPPPETGDAF
TGSGVDNFGGIAQFATQLFAQVANAQSQQANDAEPPTSSTMDNLLRVLKTAVNEELVQEV
DTLYQFNITGIQDGNFFADLRTGSGVVGLGVCSESPDVTFSLSMSTLQKIIAGSVTPYNA
YIGGQLHMDGDTDKAMKLEKVVKDIKI
Nucleotide sequence
Length: 1,683
>KH2012:KH.S1266.1.v1.A.nonSL4-1
GAGTACATTCAAATATCAACCTGTTAAGCAATATGAAGAAATTGATTTTCGATCTCATTT
TACATTCAGTGGGGACGAAAAACGGATTAAAAATACCTTTAAAACAGAAAGTACTCAAAC
TTGCTTTGATTGCATCTGCACCAGTTTCGTGAAGTTCTTTGTGTTTTTATTTTTTTTAGT
TACTTTTCCAATTTCTGGATTCTTTTGTTTGAAAATTGCTCACCAGTATGAAAGAATCAT
CATATATCGACTTGGGAGACTCATTCCAATTAAAGGTCCCGGTGTTGTGCTGGTGTTGCC
ATGTATTGACCACTGGAAGAAAGTAGACATGAGAACAAAAGCATTTAATGTGCCACCCTC
CAAGCTATGTACAAGTGATGGCTGCATCATCTCCATTGGAGCCATTGTTCATTTCAGTAT
TCAGGATCCTCGCTTAATGAGTTTGTCTGTTCAAAACATGAACCATTCTATTAGAGATGC
TTCACAAGGCTGCATGATGAATTTGCTCTGCAAGAAAACTTACAACGACATAAAAACGAA
GCGACAAGGTTTGTCATACGACCTACAAGTCGATATCAACCAGTCAGCAAAGGAATGGGG
TTTAGCTGTAAGCAGGGTTGAATTATCTGACATTACTTTAATTATGGCTCCACAGAATAA
AACACCAGCATTCATGCCAATGTATGGAGCCCCACCGCCTCCGGAAACAGGAGATGCATT
CACAGGTTCGGGAGTGGATAATTTCGGGGGTATTGCTCAATTTGCAACGCAACTGTTCGC
GCAAGTTGCCAATGCTCAATCTCAACAAGCAAATGATGCGGAACCACCAACCAGTTCAAC
AATGGACAACTTGCTTCGTGTTTTAAAAACTGCAGTGAATGAAGAACTTGTGCAAGAGGT
TGATACACTTTATCAATTCAACATAACCGGTATACAAGATGGAAATTTTTTCGCTGATTT
AAGAACAGGATCTGGTGTGGTTGGTTTGGGTGTATGCAGCGAGTCTCCTGATGTTACTTT
TTCCCTATCTATGTCTACACTGCAAAAGATAATTGCAGGTTCGGTAACTCCATATAATGC
TTATATAGGTGGCCAGCTTCATATGGATGGGGACACAGACAAAGCCATGAAACTTGAAAA
AGTTGTGAAAGATATTAAAATATAAACTTATTTCGGAGTGAAATAGTGATTAAAGGTATT
GCAAATTATGCTTCACTGTGCACTTTATAAATGAGTTGCTTGTTTTTTTACCTGTATACC
TCTAAAACAGAATTTGGTAAATTGCTAAAACTCAAAACTATTGATGAATATTCTATCACT
TTGTTCTTTAAATGAATAAAATGAGTTGTATATTTGTTATTTTTATAATGGAAACCGTGG
GGGAAATTTATATTTTCAAATGCAATTTTGTTGGGTTTTATCCACTTACTAGTGATAGTT
ATTACTATTCATAATGAAGCAATTGACAAGTAAAACTTCAAAAATAATCTAAAAATTGTG
GTTATTAATATGATCATGAAAGGCTATTTTTTATTGGCATAATAAATTTGAGAAATACAA
CATTCACTGTTTTCATTTGTTGCAAATGGCACTCCTGGCTCTTTGGTGAGCAGTTCTAGC
ATCATACCCATGTTAGGTGTTGGTTGTTTGTACTATTGTCAGTATGTGTCACCTGTTTTA
TCA
| PANTHER |
SLP1 (IPR028517) - T[28-386] 4.4E-129 |
| SMART |
Band_7 (IPR001107) - T[68-219] 3.9E-26 |
| Pfam |
Band_7 (IPR001107) - T[72-213] 2.3E-14 |
| PRINTS |
Stomatin_fam (IPR001972) - T[75-97] 3.2E-18 - T[122-143] 3.2E-18 - T[177-200] 3.2E-18 - T[201-219] 3.2E-18 |
| SUPERFAMILY |
Band_7/SPFH_dom_sf (IPR036013) - T[99-213] 2.35E-20 |
| Gene3D |
SCP2_sterol-bd_dom_sf (IPR036527) - T[276-386] 2.1E-22 |
| SUPERFAMILY |
SCP2_sterol-bd_dom_sf (IPR036527) - T[278-385] 1.67E-19 |
| Pfam |
SCP2_sterol-bd_dom (IPR003033) - T[283-383] 5.3E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STOM_HUMAN | 34.359 % | 142 | 1.08E-39 |
| PODO_HUMAN | 32.222 % | 125 | 1.68E-32 |
| STML1_HUMAN | 33.907 % | 234 | 1.04E-73 |