- Transcript 'Boleac.CG.SB_v3.S18....' >
- Transcript 'KH2012:KH.C14.163.v1...' >
- Transcript 'KH2012:KH.C7.721.v1....' >
- Transcript 'KH2012:KH.S1266.1.v1...'
Transcript Model
Transcript Id
KH2012:KH.S1266.1.v1.A.nonSL2-1
Possible name(s)
NPHS2; STOM; STOML1
Gene model
Location
KhS1266 [8,689 / 10,399]
Amino acid sequence
Length: 396
>KH.S1266.1.v1.A.nonSL2-1
FKVLGVYKMSTFKYQPVKQYEEIDFRSHFTFSGDEKRIKNTFKTESTQTCFDCICTSFVK
FFVFLFFLVTFPISGFFCLKIAHQYERIIIYRLGRLIPIKGPGVVLVLPCIDHWKKVDMR
TKAFNVPPSKLCTSDGCIISIGAIVHFSIQDPRLMSLSVQNMNHSIRDASQGCMMNLLCK
KTYNDIKTKRQGLSYDLQVDINQSAKEWGLAVSRVELSDITLIMAPQNKTPAFMPMYGAP
PPPETGDAFTGSGVDNFGGIAQFATQLFAQVANAQSQQANDAEPPTSSTMDNLLRVLKTA
VNEELVQEVDTLYQFNITGIQDGNFFADLRTGSGVVGLGVCSESPDVTFSLSMSTLQKII
AGSVTPYNAYIGGQLHMDGDTDKAMKLEKVVKDIKI
Nucleotide sequence
Length: 1,710
>KH2012:KH.S1266.1.v1.A.nonSL2-1
ATTCAAAGTTTTAGGTGTTTACAAAATGAGTACATTCAAATATCAACCTGTTAAGCAATA
TGAAGAAATTGATTTTCGATCTCATTTTACATTCAGTGGGGACGAAAAACGGATTAAAAA
TACCTTTAAAACAGAAAGTACTCAAACTTGCTTTGATTGCATCTGCACCAGTTTCGTGAA
GTTCTTTGTGTTTTTATTTTTTTTAGTTACTTTTCCAATTTCTGGATTCTTTTGTTTGAA
AATTGCTCACCAGTATGAAAGAATCATCATATATCGACTTGGGAGACTCATTCCAATTAA
AGGTCCCGGTGTTGTGCTGGTGTTGCCATGTATTGACCACTGGAAGAAAGTAGACATGAG
AACAAAAGCATTTAATGTGCCACCCTCCAAGCTATGTACAAGTGATGGCTGCATCATCTC
CATTGGAGCCATTGTTCATTTCAGTATTCAGGATCCTCGCTTAATGAGTTTGTCTGTTCA
AAACATGAACCATTCTATTAGAGATGCTTCACAAGGCTGCATGATGAATTTGCTCTGCAA
GAAAACTTACAACGACATAAAAACGAAGCGACAAGGTTTGTCATACGACCTACAAGTCGA
TATCAACCAGTCAGCAAAGGAATGGGGTTTAGCTGTAAGCAGGGTTGAATTATCTGACAT
TACTTTAATTATGGCTCCACAGAATAAAACACCAGCATTCATGCCAATGTATGGAGCCCC
ACCGCCTCCGGAAACAGGAGATGCATTCACAGGTTCGGGAGTGGATAATTTCGGGGGTAT
TGCTCAATTTGCAACGCAACTGTTCGCGCAAGTTGCCAATGCTCAATCTCAACAAGCAAA
TGATGCGGAACCACCAACCAGTTCAACAATGGACAACTTGCTTCGTGTTTTAAAAACTGC
AGTGAATGAAGAACTTGTGCAAGAGGTTGATACACTTTATCAATTCAACATAACCGGTAT
ACAAGATGGAAATTTTTTCGCTGATTTAAGAACAGGATCTGGTGTGGTTGGTTTGGGTGT
ATGCAGCGAGTCTCCTGATGTTACTTTTTCCCTATCTATGTCTACACTGCAAAAGATAAT
TGCAGGTTCGGTAACTCCATATAATGCTTATATAGGTGGCCAGCTTCATATGGATGGGGA
CACAGACAAAGCCATGAAACTTGAAAAAGTTGTGAAAGATATTAAAATATAAACTTATTT
CGGAGTGAAATAGTGATTAAAGGTATTGCAAATTATGCTTCACTGTGCACTTTATAAATG
AGTTGCTTGTTTTTTTACCTGTATACCTCTAAAACAGAATTTGGTAAATTGCTAAAACTC
AAAACTATTGATGAATATTCTATCACTTTGTTCTTTAAATGAATAAAATGAGTTGTATAT
TTGTTATTTTTATAATGGAAACCGTGGGGGAAATTTATATTTTCAAATGCAATTTTGTTG
GGTTTTATCCACTTACTAGTGATAGTTATTACTATTCATAATGAAGCAATTGACAAGTAA
AACTTCAAAAATAATCTAAAAATTGTGGTTATTAATATGATCATGAAAGGCTATTTTTTA
TTGGCATAATAAATTTGAGAAATACAACATTCACTGTTTTCATTTGTTGCAAATGGCACT
CCTGGCTCTTTGGTGAGCAGTTCTAGCATCATACCCATGTTAGGTGTTGGTTGTTTGTAC
TATTGTCAGTATGTGTCACCTGTTTTATCA
| PANTHER |
SLP1 (IPR028517) - T[37-395] 4.4E-129 |
| SMART |
Band_7 (IPR001107) - T[77-228] 3.9E-26 |
| Pfam |
Band_7 (IPR001107) - T[81-222] 2.4E-14 |
| PRINTS |
Stomatin_fam (IPR001972) - T[84-106] 3.5E-18 - T[131-152] 3.5E-18 - T[186-209] 3.5E-18 - T[210-228] 3.5E-18 |
| SUPERFAMILY |
Band_7/SPFH_dom_sf (IPR036013) - T[108-222] 2.35E-20 |
| Gene3D |
SCP2_sterol-bd_dom_sf (IPR036527) - T[285-395] 2.2E-22 |
| SUPERFAMILY |
SCP2_sterol-bd_dom_sf (IPR036527) - T[287-394] 1.74E-19 |
| Pfam |
SCP2_sterol-bd_dom (IPR003033) - T[292-392] 5.6E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STOM_HUMAN | 34.359 % | 142 | 1.24E-39 |
| PODO_HUMAN | 32.222 % | 125 | 2.92E-32 |
| STML1_HUMAN | 33.907 % | 234 | 1.23E-73 |