- Transcript 'KH2012:KH.C14.53.v2....' >
- Transcript 'KH2012:KH.C11.700.v1...' >
- Transcript 'KH2012:KH.L96.17.v1....'
Transcript Model
Transcript Id
KH2012:KH.L96.17.v1.R.ND1-1
Possible name(s)
DOC2B; RPH3A
Gene model
Location
KhL96 [13,817 / 28,942]
Amino acid sequence
Length: 694
>KH.L96.17.v1.R.ND1-1
YLRSKMLTGNAEDAAQHAWVCPSDRQLTLRSKLRAGWSVRAAQTDRQRRSSTLSDEELKK
IRQVIERAENMDQAEQKRVGKLVHRLDDMRSNSAGDGKLRCILCAEAFGKLMGASSFVCV
DCKKNVCSKCSVEFSPHLIRGSHSMDSSRGRSSNRKSSTTKWLCKICSEGRELWKRSGAW
FFQSLPRYILPEQTSNGMNQNFPIRTLGSTIIPQSPGSPMHKPTKDFATTPTSTYTQHKY
MVRRRSSSSESSDSSDISSFGKPASFYKKSDSASITSSTSYTNSNDASSRRSEQILFDNN
PARSNGFAALSGSENSLNVPGGARKRRISGTRNRQHKKSVGDKSIEDIGTNNPDMWSLHS
SGVDGGSYIVETNAKNEIVTENTAGLGSLEFTLLHDSHKLALYVTVIRARGLKAMDINGF
SDPYVKLHLLPGSKKSTKMRTKTKQKTLNPTFDETLTYWGVTDADIQKKTLRLTVLDEDR
LGDNEFIGEVRIQLKNFNLTQTNTYNMGLTEHQDIKEDEDSSERGRIMVTLSYQPRDTML
VATINRCSSLLPVARTNTIDPQVKLCLKSEANPSEFTFKKTERRKNTKTSNPAFNETMKL
PLPAQARELVNCSLDVSVWDKDTFGKEHLIGAVCFGIHSKGDKLKQWFNCVKKPQEAHEM
WHSLTLPNDPEKISSLAEAGRRSRTPRFHRKLHS
Nucleotide sequence
Length: 3,921
>KH2012:KH.L96.17.v1.R.ND1-1
AGCAGTGTGGTTTCTAAAGACACAGCAGGAAGAAGATGACTCGGATAATGGATAAACGTT
GGTTGATTGGTTTATGGTTGTAATACCTCCGCTCTAAAATGCTTACGGGAAACGCAGAAG
ACGCAGCACAGCATGCTTGGGTTTGCCCATCTGATCGTCAACTAACTCTACGCTCAAAAC
TACGAGCTGGGTGGTCAGTTAGAGCTGCACAAACTGACCGACAGAGGCGATCCAGCACGC
TTAGTGATGAGGAATTAAAGAAGATACGTCAAGTCATAGAAAGAGCAGAAAACATGGATC
AAGCGGAGCAAAAACGAGTGGGAAAGCTGGTGCACAGACTTGATGATATGAGAAGTAATT
CAGCTGGTGACGGGAAGTTACGATGTATATTATGTGCTGAGGCATTTGGGAAGCTAATGG
GAGCTTCTTCATTTGTTTGTGTGGATTGTAAAAAGAATGTATGCAGCAAATGTTCTGTTG
AATTTTCCCCTCATTTAATACGTGGATCACACTCAATGGATAGCAGCCGTGGAAGGAGCA
GCAACCGAAAGTCTTCAACTACTAAATGGCTTTGTAAAATATGCAGTGAGGGCAGGGAGT
TGTGGAAAAGATCGGGTGCTTGGTTCTTTCAAAGCTTGCCAAGGTATATACTGCCAGAAC
AGACATCTAATGGGATGAACCAAAACTTCCCGATCCGTACGTTAGGTAGCACCATTATCC
CTCAATCCCCTGGATCTCCAATGCATAAGCCAACCAAAGACTTTGCAACAACACCTACAT
CTACATACACACAACATAAATATATGGTCCGAAGAAGGTCGTCCAGCAGTGAGAGTTCGG
ACAGCAGCGATATTTCAAGTTTCGGAAAACCTGCAAGCTTTTACAAAAAAAGCGATTCAG
CGAGCATCACAAGCAGCACAAGTTACACAAACAGTAACGACGCTTCTAGCCGAAGATCGG
AGCAAATTTTGTTCGACAATAATCCAGCGCGCTCAAATGGGTTTGCTGCGTTATCGGGCA
GTGAAAACAGTCTCAATGTACCAGGTGGGGCAAGGAAACGTAGAATTTCTGGCACCAGGA
ACCGACAGCATAAGAAATCCGTTGGAGATAAATCAATAGAAGACATTGGCACCAACAACC
CAGACATGTGGAGTTTACATTCAAGTGGTGTCGATGGAGGAAGCTATATTGTTGAAACGA
ATGCAAAAAATGAAATTGTTACTGAAAATACAGCTGGCCTTGGTAGTTTGGAGTTCACCC
TACTACACGACTCCCACAAGCTTGCATTGTATGTCACTGTGATCCGCGCAAGGGGTCTTA
AAGCAATGGATATCAACGGGTTCTCTGATCCTTATGTTAAGCTCCACCTTTTACCAGGTT
CCAAGAAGTCAACTAAAATGAGGACCAAGACGAAACAAAAGACACTGAACCCGACATTTG
ATGAAACCCTCACATATTGGGGGGTTACGGACGCCGATATTCAAAAGAAAACTTTACGTC
TCACAGTCTTGGATGAAGACAGACTTGGAGATAATGAATTCATTGGTGAAGTAAGGATTC
AATTAAAGAATTTCAACTTAACTCAAACCAATACATACAACATGGGACTCACTGAACATC
AGGATATAAAGGAAGATGAAGATAGTAGTGAAAGAGGAAGGATTATGGTGACCTTATCCT
ACCAACCTAGAGATACAATGTTAGTCGCAACCATTAACAGATGTTCAAGTCTTCTTCCTG
TTGCAAGGACAAACACAATTGACCCACAAGTTAAACTCTGCTTAAAGTCAGAAGCAAATC
CTTCAGAGTTCACCTTCAAGAAAACTGAGCGTCGAAAAAATACGAAGACCTCTAACCCTG
CTTTCAATGAAACTATGAAGCTACCATTGCCCGCACAAGCCCGTGAACTTGTTAATTGCT
CGTTGGATGTGAGTGTGTGGGACAAAGACACCTTTGGGAAGGAACATCTTATTGGTGCTG
TGTGCTTTGGTATTCACAGTAAAGGTGACAAACTAAAGCAATGGTTCAACTGTGTAAAGA
AACCTCAAGAAGCACACGAGATGTGGCATTCACTAACATTACCAAACGATCCAGAGAAAA
TTAGCAGCCTAGCTGAAGCAGGGAGACGAAGCAGAACTCCACGTTTCCATAGAAAACTAC
ATTCATAGCTGCTCAAGATTGGCAAGTTTTTATGATATTGTTTTAACATGACATCTCTGT
AAGTGTGATAGGACATGTCATGGGACCTTGCAATTAGGTCAGAGTTGGCTCATTACCCAA
ACATTATATATGCACATTTTATTCTATGTGGGTGAGGTTCTTCAGTGAGGCACACCATGG
GACCTGAGATTTGGGCCAGAGTTGGCTTATTACCCCAACACACAAGGTGCTACTAAATGA
TACAACACAGTTAATATTATATTAACATTTTAACCATGACATAATTTTATTGGAAATCTA
GATTCATATTTAAAGTTTATTTTTCAAGTGCACATATATGTCAGTACTACCTAGTTGCAT
TTTATATTGCTTAATATATAGTAGGGTGGGGGAAGATGGGGCACCTTTTTGATCATATTT
TCTTGTCCCATTTGGTAGTAAATAGAGAACATTTAAAAAATTATAAAACCGTATCCCCAA
GATTCCCACACACAATTTTGGGATATTTTTGTGCTTAAGGTGTCCTGTCTTCCCCCACTG
TAATATATATGACTCTTAGAATAAATAGTGGTGATATTTAAAATATACAGGTTAAAATAT
ATTTGTCATCAAACTTTTATTGCAAACACATTTTGTATTTAAACAGCTCATTTAGTAGTT
ATAATAATATGATATTTCTACTTGAATGTTTAATTATGGTGTAAAGGGTTGCGAAAGAAT
GTAATTTTGTTCATGATTTTTAAATTTATTTATGAAAATAGTTTTGACAAATAGTGGAAA
AAGCGGGCACATCTTAAGTCTTTAAATTAAAAATCACTTTTATCACGTACTTACATTTGG
TGTTAACTTTTTGGGTGTTTGGCTTTTATTTATATTTCCACAATATTGTAATTGCTGTTT
ATTTTCATTTTATGTTTCACCGTTTTCTGTATATTTCATTTAAGTTGTTTTTTACATTTA
GTTCAGGCACAATATTTCTTTTTATTCGCACAGTTGATGTTTTAAACAAGTTTTCCACCG
GTTTTACATTCACGTTTATTGTGTTCATTCATTTTACCACTTGCTTATTTGCACATCTGT
TGATGAAAACATGGGTGTTGTCACAACAACCAGTTTCTGGTCTGTGTGAGTTAAATATGT
TCCTTTACACAGTACCAATATATAACTATATATATAGGCGGCATTTCTTTTATGGTAGTG
GTTCTTAAACTTCGAGACTTGTTCTTATTTGTAGAACATAAGACAATAGTATGGTAGAGT
GGGGGTGAAGGGACATCTTTAGCACATAATATCCAAACATCCTGATCGTGTTTTAAACTA
TTAACAACATTCTATGGGAGTCTAAGGATACGGTTTTTGTTCACTATCAAAAATAGAATG
GGAAAAATAGAATAAAGGGTGTCCCATGTCTACCGCACTCTGCTGTATCATCTTTTGACT
AAATTTCGCAATGATGGTTTTATCAAATGGGTGTCTGGGTCTGGCTCTAAATGTTTAAGA
AGCACTGCTATATGGATTGCCAGCCTATATCCAGTGCCATGACATTTTCCAATGCAAAAT
GTAACTATTGTTGCCTTTTTTCTGTGTTTTCTGTAAATCTAAATAAGCTTGAATGACAGT
TTTACTGCCCAAAACTAAATTATAAAACTGTGAAAAGTGTTTCCGTGTTCAGTGTCACTT
TGTACTCTTGCTTTTAGAAGTCACATTGTAAATGTATATGCAGCCTATAGTGTATTATGT
TAAGTACAAAACTAAATGGTG
| PANTHER |
RPH3A (IPR028698) - T[15-305] 6.5E-124 - T[375-668] 6.5E-124 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[44-196] 1.1E-32 |
| ProSiteProfiles |
Rab_BD (IPR010911) - T[47-184] 13.855 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[51-191] 8.63E-25 |
| ProSiteProfiles |
Znf_FYVE-rel (IPR017455) - T[95-172] 8.851 |
| Gene3D |
C2_domain_sf (IPR035892) - T[379-511] 1.4E-40 - T[512-665] 6.5E-31 |
| SMART |
C2_dom (IPR000008) - T[401-506] 7.9E-18 - T[539-649] 2.6E-7 |
| Pfam |
C2_dom (IPR000008) - T[402-501] 2.0E-23 - T[540-649] 1.2E-11 |
| ProSiteProfiles |
C2_dom (IPR000008) - T[402-491] 20.372 - T[540-634] 10.915 |
| PRINTS |
Synaptotagmin (IPR001565) - T[404-417] 2.7E-6 - T[462-477] 2.7E-6 - T[482-492] 2.7E-6 |
| PRINTS |
C2_dom (IPR000008) - T[417-429] 3.2E-6 - T[446-459] 3.2E-6 - T[471-479] 3.2E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DOC2B_HUMAN | 43.75 % | 241 | 5.49E-73 |
| RP3A_HUMAN | 41.1 % | 229 | 1.2E-65 |
| DOC2A_HUMAN | 37.963 % | 214 | 7.64E-63 |