- Transcript 'KH2012:KH.S404.1.v4....' >
- Transcript 'KH2012:KH.L87.24.v1....'
Transcript Model
Transcript Id
KH2012:KH.L87.24.v1.A.SL1-1
Possible name(s)
PABPC1; PABPC3; SART3
Gene model
Location
KhL87 [48,658 / 58,348]
Amino acid sequence
Length: 931
>KH.L87.24.v1.A.SL1-1
KMSNTDTMEAHASTAVVEQEKNKNDDVVMKDDPDSDEEEEVNLAEIKLLNEKISNSPYNY
QAHVDRIALLRKCGEFENLSSARHKMKDLFPLTKQLWLEWLEDEQKFAESEDDHQKLESL
FELAVQDYLSCEIWLEYIQYSIRYIGTSDGVKKLRNLAERALSSVGLHVLKGSSVWEAYR
EIESAVLATIQPQPGSITTPEQNDQIIQQTAKVGLLFTRQLAVPLLNMESTMVEYEEWWK
DNGDGEIPESVLHSYDKALEQMEELKIMELALESAESPKTEEYNAYIDHEMKSNNPARIQ
CIYERAITDNCLNAQLWMDYLKYLTNTLKSGPIVLSAYKRSVRNCPWVAKLWVGLVLTLE
RNSEPQNKVEEGLNEALAVGFSSASEYLELWRCWCDYIRRTHEENPQEGMTVVRTEFKRA
TSHLLNEVLPGFSENADHDYTMWIYWANIEARGSQGIDEARKIMEEVMKHPDARLNWKIW
EQYYHLERLHGDLTHARNVLRHAVQSSAADDGSAESACEFLIRFERENGSLSDLDESIKK
VEGRMSKVIKRREKLVAFAEERQKKQGGKKFDKNKKPRHSPNKKENRQATKRNISNTEPQ
ENIKRKRTHSPNKEGFKEPAGLPPRFVKAKSPEKTIAPPPGYKPDKQQGQENEAPTPMSE
DQPAQATITSDERTAEGDKHTVFISNMSYSVQSPEEKLKIMFGCCGDVKSVRVVRDHKGK
MRGFGFVTFHQIEDVEKALNLDRQPLEGRPLYVSRNTEKSNRQKVFKYETKIEKHKLFVS
GLNFATTEETLQKVFSEHGVVKSARIVVTKGGKSKGIAFIEYENESDAAQAVMKMDETEM
DGFTIKVAISNPPPRGRSSTMGKSLGQVERGTTVGSRGKGKSQVTLIPRSLQSSKVTKPD
TIGKQEKDANDNTIHSKGLSNRDFAGLYSNP
Nucleotide sequence
Length: 3,080
>KH2012:KH.L87.24.v1.A.SL1-1
GATTTCTTTTCTCCTTTGTGCCATAATTATGGGTTAGAAAATGTCGAACACTGATACAAT
GGAAGCTCACGCATCGACTGCCGTTGTCGAGCAAGAGAAAAATAAAAACGATGACGTTGT
GATGAAAGATGACCCGGATTCCGACGAAGAGGAAGAAGTCAATCTTGCTGAAATTAAATT
ACTTAATGAAAAAATAAGCAACTCTCCATACAACTACCAAGCGCATGTGGATCGAATAGC
TTTGTTAAGAAAATGTGGTGAGTTTGAAAATCTATCGTCTGCTCGACATAAGATGAAGGA
TTTGTTCCCACTTACAAAGCAATTATGGCTTGAATGGCTGGAAGATGAACAAAAATTTGC
CGAGTCAGAAGATGACCATCAAAAACTTGAGTCATTGTTTGAACTAGCTGTTCAAGATTA
TCTGTCTTGTGAAATATGGTTGGAATATATTCAATATTCCATTCGTTATATTGGCACTTC
AGATGGAGTAAAAAAGCTACGAAATTTAGCGGAACGAGCTTTATCTTCGGTTGGTCTTCA
TGTATTAAAAGGTTCATCTGTTTGGGAGGCATACAGGGAGATAGAAAGTGCCGTTCTTGC
TACAATACAGCCACAACCAGGCAGTATCACTACACCAGAACAAAATGATCAGATTATTCA
ACAAACAGCAAAAGTTGGACTTCTTTTCACCAGGCAACTGGCAGTACCATTGCTTAACAT
GGAATCCACCATGGTTGAATATGAAGAATGGTGGAAAGATAACGGAGATGGGGAAATCCC
TGAATCGGTACTACATTCTTACGATAAAGCTCTCGAACAAATGGAAGAATTGAAAATAAT
GGAACTTGCTTTGGAATCTGCTGAATCTCCCAAAACTGAAGAATACAACGCATATATTGA
CCATGAGATGAAATCAAACAACCCTGCGCGTATACAATGTATTTACGAACGTGCGATCAC
CGATAATTGCCTCAATGCTCAACTATGGATGGACTACCTTAAATACTTGACAAACACATT
AAAGAGTGGACCCATCGTGCTATCTGCTTACAAACGATCAGTAAGGAACTGCCCATGGGT
AGCCAAGCTATGGGTTGGGTTGGTTCTTACTTTAGAGAGGAATAGTGAACCTCAAAATAA
GGTTGAAGAAGGGCTTAACGAAGCATTGGCTGTTGGTTTCTCATCAGCGTCAGAATACTT
GGAGTTGTGGAGGTGTTGGTGTGATTACATTCGAAGAACTCATGAAGAAAACCCTCAAGA
AGGAATGACAGTTGTACGAACTGAGTTTAAACGAGCTACGTCACATTTGTTGAACGAGGT
TTTACCAGGTTTCAGTGAAAATGCGGACCACGATTACACGATGTGGATTTACTGGGCGAA
TATTGAAGCACGAGGATCACAAGGTATCGATGAAGCTCGGAAGATAATGGAGGAAGTGAT
GAAACATCCGGATGCAAGGTTGAACTGGAAGATTTGGGAGCAATATTACCATCTTGAGAG
ATTACACGGCGATTTAACTCACGCTCGAAATGTGCTGCGTCATGCTGTGCAGTCAAGCGC
GGCTGATGATGGAAGTGCTGAGTCAGCATGTGAGTTCCTCATCCGATTCGAGCGAGAAAA
CGGAAGTTTATCGGATCTCGATGAATCAATAAAGAAAGTTGAAGGAAGGATGAGTAAAGT
CATCAAAAGGAGGGAAAAACTTGTCGCGTTTGCTGAGGAAAGACAGAAAAAACAAGGTGG
TAAGAAATTTGATAAAAATAAAAAGCCTCGCCATAGTCCAAACAAGAAAGAAAACAGACA
AGCAACTAAAAGGAATATTTCTAACACTGAACCACAAGAAAACATAAAAAGAAAACGAAC
ACATTCACCCAATAAAGAAGGATTTAAAGAACCAGCAGGCCTCCCACCACGATTTGTGAA
AGCAAAATCTCCAGAGAAAACAATAGCGCCACCACCTGGATATAAACCCGACAAACAACA
AGGACAAGAAAATGAAGCCCCAACGCCTATGTCTGAGGACCAACCTGCCCAAGCCACGAT
AACGAGCGATGAACGAACAGCGGAGGGCGATAAACACACCGTGTTTATCAGTAATATGAG
CTATAGTGTCCAGTCTCCTGAGGAAAAGCTTAAAATTATGTTCGGATGTTGTGGTGATGT
GAAGTCAGTTAGAGTAGTGAGAGATCATAAAGGGAAGATGAGAGGATTCGGGTTCGTTAC
TTTCCATCAAATCGAGGACGTGGAAAAAGCGCTCAATCTCGATCGACAACCATTAGAGGG
CAGGCCATTATACGTTTCAAGAAACACTGAAAAATCAAATCGTCAAAAGGTGTTCAAATA
TGAGACAAAAATAGAGAAACACAAGTTGTTCGTATCCGGGCTTAACTTTGCTACCACTGA
AGAAACGTTGCAGAAGGTTTTCTCCGAACACGGTGTCGTGAAGTCGGCTCGTATAGTAGT
TACCAAGGGGGGCAAATCAAAGGGGATTGCGTTTATTGAATACGAGAATGAGTCTGATGC
AGCACAAGCTGTTATGAAAATGGACGAAACTGAGATGGATGGTTTCACTATTAAGGTTGC
TATTAGCAACCCTCCACCACGAGGACGTAGTTCAACTATGGGAAAATCACTTGGTCAAGT
TGAGCGCGGTACTACTGTTGGAAGTCGTGGAAAGGGCAAGAGCCAGGTGACTCTAATCCC
AAGGTCACTACAGAGTTCAAAAGTCACCAAACCAGACACAATTGGAAAACAAGAAAAAGA
CGCAAACGACAATACTATCCATTCCAAAGGGTTAAGCAATAGGGATTTTGCTGGCCTTTA
TTCAAACCCTTAAAGTGGAACTGTTAAGTTAGAAATACGTTCTTTTCACATGATTCTGTT
AATCGACCACGCGTGGCGGAAAAGTTGGTTTTTAGGGCAAAGGTAGTTTGCTGACTGCCC
GACTTTTTTACGTTGTCAAATCAAGTTCATTTTAAAAACCGCTGAGTTACTGCACAAAGT
GCGTATCTTTTTTAATCATAAAAGTCGACAAAAGCAACGATATTGTAGTTTATAAGAGTG
AATGAATGAAACTTACTTTA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[49-244] 5.1E-38 - T[274-570] 4.2E-44 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[51-554] 2.66E-53 |
| SMART |
HAT (IPR003107) - T[74-106] 200.0 - T[112-143] 9.2 - T[149-185] 1100.0 - T[294-326] 0.014 - T[364-400] 120.0 - T[455-489] 140.0 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[641-768] 6.1E-24 - T[769-883] 1.0E-23 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[676-764] 1.22E-21 - T[772-860] 8.6E-25 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[680-758] 17.592 - T[775-852] 17.677 |
| SMART |
RRM_dom (IPR000504) - T[681-754] 1.5E-17 - T[776-848] 4.6E-23 |
| Pfam |
RRM_dom (IPR000504) - T[682-751] 8.2E-14 - T[777-846] 2.4E-18 |
| CDD |
SART3_RRM2 (IPR034218) - T[773-853] 2.86451E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SART3_HUMAN | 39.317 % | 607 | 0 |
| PABP1_HUMAN | 34.503 % | 94.4 | 8.33E-20 |
| PABP3_HUMAN | 35.088 % | 94.7 | 6.22E-20 |