- Molecular Tool 'Ets1/2-MO (Lemaire Lab)' >
- Transcript 'KH2012:KH.L8.11.v1.R...'
Transcript Model
Transcript Id
KH2012:KH.L8.11.v1.R.nonSL5-1
Possible name(s)
TBX2; TBX4; TBX6
Gene model
Location
KhL8 [1,019 / 4,977]
Amino acid sequence
Length: 531
>KH.L8.11.v1.R.nonSL5-1
NTEVELQMEDSSCLRKTGDMLDVNTNSNLTEMVAPAAVCNFRPDLNTSGLREMPYARNLQ
RPRGAPLLEQSNPYISKFDSNPNSGSILTVDSSHPPNLSGGIYRQHSFTNAPTLNSDANL
KVELCDRKLWQEFSNVGTEMIVTKAGRRMFPGYRVNISGMEPDANYCVMMDIVNVDEHRY
KFQQGEWMVAGKGELHSPQRMFLHPDSPSPGRKWMNDIISFYKIKLSNSVNGRSTDKIVL
NSMHRYQPRIHIVRTDDVNTLHLQPMSTFAFPQTVFVTVTAYQNGQVTKLKINNNPFAKG
FRDNGGRSNKTNRSSSGRGSIGLVQPSNEEENTKEPHSEETRNSQTRKRKANKLEYAIES
EHKLMHYSYQSESNTNKTVPLDRLNPAAVVGPTTGYPFYSYPQAIHHTPTAPHPLLHYPP
PMRNLFSGQSHEPTSTLPLSRFGIPPTYEYHNLYNPFHFQIPNPSTHTPFVPVSGVTSET
EQKYDFPSKHDLDSSTLTNTSPTNAQSIYSMLHANTNWNNPFNVSKTNSEY
Nucleotide sequence
Length: 1,673
>KH2012:KH.L8.11.v1.R.nonSL5-1
CATAGTATCGTTATACATTCATTAAGTATAGAACACTGAAGTGGAATTACAAATGGAGGA
CAGCAGTTGTTTGAGAAAAACAGGAGATATGTTAGACGTAAATACGAACAGCAACCTGAC
TGAAATGGTTGCACCGGCAGCAGTTTGCAACTTTAGACCAGATTTAAATACATCGGGTTT
GCGTGAAATGCCATACGCAAGGAATTTACAACGGCCAAGAGGTGCACCGCTGCTTGAACA
GTCAAATCCATATATTTCAAAATTTGACTCAAATCCAAATTCAGGTTCGATTTTAACCGT
TGATTCAAGCCACCCACCCAATCTTTCTGGTGGGATATATCGACAACATTCTTTCACGAA
CGCTCCCACTTTAAACTCGGATGCCAATCTTAAAGTTGAACTTTGCGATCGAAAATTATG
GCAAGAGTTTTCAAACGTTGGGACAGAAATGATAGTAACGAAAGCAGGGAGACGAATGTT
TCCTGGCTATCGAGTAAATATATCTGGAATGGAACCGGATGCTAATTATTGCGTCATGAT
GGACATTGTAAACGTAGACGAACATAGATATAAATTCCAGCAAGGCGAATGGATGGTGGC
AGGTAAAGGAGAGCTTCATTCACCACAGAGAATGTTTCTTCATCCTGATAGTCCATCACC
GGGTAGAAAATGGATGAATGACATAATTTCTTTTTATAAAATCAAATTATCAAACTCCGT
AAACGGTCGATCCACAGACAAGATCGTTCTGAACTCCATGCATCGGTATCAACCTCGTAT
CCACATCGTTCGTACTGATGACGTCAATACTCTGCATCTTCAACCGATGTCAACTTTCGC
TTTTCCACAAACTGTTTTCGTTACAGTCACAGCCTACCAAAACGGACAGGTAACAAAACT
CAAAATCAACAACAATCCATTTGCGAAAGGTTTTCGTGACAACGGTGGAAGGTCGAACAA
AACGAACCGATCATCATCGGGCAGAGGATCGATTGGTTTAGTACAACCGAGCAATGAGGA
AGAAAATACAAAAGAACCTCATTCTGAAGAAACCAGAAATTCTCAAACTCGAAAGCGCAA
AGCGAACAAGTTGGAGTATGCAATCGAGTCCGAACATAAATTAATGCACTACTCGTATCA
GAGTGAATCCAACACAAACAAAACAGTTCCGTTGGATCGTCTAAATCCCGCTGCAGTAGT
TGGGCCTACAACTGGTTACCCGTTCTATTCCTATCCACAAGCGATTCATCATACCCCAAC
AGCACCACATCCTCTTTTACACTACCCACCACCAATGAGAAACTTGTTTAGTGGGCAGTC
GCATGAACCAACAAGTACTTTGCCGCTCAGCCGTTTCGGTATTCCTCCAACATACGAGTA
TCACAACTTGTATAACCCATTCCACTTTCAAATACCAAACCCTTCTACACATACGCCTTT
TGTTCCTGTTTCTGGGGTGACGAGTGAAACCGAACAGAAATACGACTTCCCTTCTAAACA
CGACTTAGATTCTTCAACACTAACAAATACCTCGCCCACAAACGCACAGTCGATCTATTC
CATGCTGCATGCCAATACCAATTGGAATAACCCTTTTAACGTTTCTAAAACAAACAGCGA
ATATTAACTCGACAATTTTTCTTGTTACAAGTTACTTACAGGCATAGTATACA
| PANTHER |
TF_T-box (IPR001699) - T[8-531] 4.1E-206 |
| Gene3D |
T-box_sf (IPR036960) - T[116-308] 4.2E-83 |
| CDD |
TF_T-box (IPR001699) - T[119-307] 4.33267E-109 |
| SMART |
TF_T-box (IPR001699) - T[119-308] 3.1E-109 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[120-303] 1.86E-72 |
| Pfam |
TF_T-box (IPR001699) - T[122-303] 2.5E-76 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[124-303] 70.792 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[129-148] . - T[203-221] . |
| PRINTS |
TF_T-box (IPR001699) - T[137-161] 2.8E-40 - T[202-215] 2.8E-40 - T[219-228] 2.8E-40 - T[239-253] 2.8E-40 - T[274-287] 2.8E-40 - T[295-303] 2.8E-40 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX6_HUMAN | 48.768 % | 222 | 6.94E-67 |
| TBX2_HUMAN | 50.761 % | 226 | 6.28E-66 |
| TBX4_HUMAN | 49.5 % | 218 | 3.88E-64 |