Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L7.5.v1.A.SL1-1

Possible name(s)

RAB2A; RAB39A; RAB39B

Gene model

KH2012:KH.L7.5

Location

KhL7 [77,502 / 80,054]

Sequences

Amino acid sequence

Length: 222

>KH.L7.5.v1.A.SL1-1
FPQIVMSDMVARSETIWAYQFRVVLLGDSTVGKSALLRRFTDGCFLEVSDPTVGVDFYSR
LIEISPGTRIKLQLWDTAGQERFRSITRSYYRSSVGALLVYDISNRQSFLHVVTWAEEAR
LHVAPRHVSFALVGQKCDLEEHRQVPTEEASNFARLHKMPFIEASAKNGKNVEKSFVMLT
ELIYRLIQSGDIIMDEQWDGIKCGLVPKPLSLDEDENKSCCA

Nucleotide sequence

Length: 1,256

>KH2012:KH.L7.5.v1.A.SL1-1
GGTTTCCCCAGATAGTCATGTCTGACATGGTGGCTCGTAGTGAGACAATATGGGCGTACC
AGTTCCGTGTTGTTCTGCTTGGTGATTCTACAGTGGGAAAGTCGGCTTTATTACGAAGAT
TCACCGATGGTTGTTTCTTAGAGGTATCCGACCCCACAGTAGGGGTGGACTTTTATTCTC
GTCTCATAGAAATATCACCCGGCACACGAATTAAACTCCAACTGTGGGACACGGCGGGCC
AGGAGAGATTCAGGTCCATCACACGGTCATACTATCGTAGCTCGGTGGGTGCGCTTCTCG
TTTACGATATTTCCAACAGACAAAGTTTCCTCCATGTTGTGACATGGGCCGAAGAAGCAC
GACTCCACGTCGCCCCCCGACACGTTTCATTCGCTCTCGTCGGGCAGAAATGCGACCTAG
AGGAACATAGACAGGTACCAACAGAAGAAGCGTCCAACTTTGCACGTTTACACAAGATGC
CATTTATTGAAGCTTCAGCCAAGAACGGGAAGAACGTGGAAAAGTCGTTTGTTATGTTGA
CCGAACTTATATACAGATTAATACAGTCCGGTGACATCATAATGGATGAACAATGGGACG
GGATTAAATGTGGTTTGGTCCCGAAACCTCTAAGTTTGGATGAGGACGAAAATAAGTCGT
GCTGCGCTTGATGTGGATGTGGTGGACCTGGTGCTCATGAAGTGTCGGGTTCAAGTGCTA
CAAAGTATGTTACAAACAAAATTCAAACCAAACGAATAGTTTACTATAAAATGTACATAT
TTTTCCTAGAATGGCATCAAGTCTTTTATTCAAATAGAATCATGATGTCATTTATGCAAA
ACATCTCGTGTTGGTTGTGTTTGACTTTTGTTTGTCACTTATAATCCTTTGGACTATTCT
TTATATTACCTGGTGGTTATTTTGTTGCAGTATAAACTAACTTATCGCATCTGTAGCAGT
ATTCTATTTCAGCCAAAAACATTTTATTGTTTTTACAGAGTTTTTTTTAAATGTTGTAAA
TTTATATTTCCGCAAATTTGTTTCATTTTCTTCAATCATTTCTTCAACATAGATGTTTTA
TTGAATCATAGATTTTATGGTGTTTTGTTATGTTTCTATTTATGGTGTTTTGTTTTTTTT
GTGTCGTCAGGTTTTTACAAAGTCCTATTAAGTATGCAGTTGCCACATATGGTACCTAAG
GTTGGCGCCATATTGTTATTACTTCTTTTGCACAAAGTTATTGCACTGTTACGTCA

InterProScan

TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[19-178] 3.9E-32
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[19-212] 1.19E-55
Pfam	Small_GTPase (IPR001806) - T[22-184] 5.6E-55

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAB2A_HUMAN	51.064 %	190	3.48E-61
RB39B_HUMAN	58.252 %	259	2.4E-88
RB39A_HUMAN	58.373 %	249	3.22E-84