- Region 'REG00000610' >
- Region 'REG00000507' >
- Region 'REG00000512' >
- Region 'REG00000614' >
- Transcript 'KH2012:KH.L59.1.v1.B...'
Transcript Model
Transcript Id
KH2012:KH.L59.1.v1.B.ND4-1
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
KhL59 [343 / 1,806]
Amino acid sequence
Length: 368
>KH.L59.1.v1.B.ND4-1
HASGTNTKVNQRDVISLRQSAYQRTSPSYNMYSNVMVNRPYAAYDPRESLTAHASFLQGH
QQPIDSKSYSMANHPSASYYPGYGMIPHFAQSLESHLQGMHNSNSRENFIQCKYPTHSTL
TNPIACQKRKGFKAKYKLVNHIRVHTGEKPFICPFPDCGKTFGRSENLKIHQRTHTGERP
FPCKFPGCERRFANSSDRKKHSYMHNTEKLYACKYEGCDRSYTHPSSLRKHIRMHESNGD
VIDNGSNHSPTSSCGSVEDVAREQNSVENNSVSTYLPPRFTSSPIHAPLATYDASEKQKF
SRVEKQAKFTEDFMNHGQDVTSSPPQLNLNTALTEDCYNNYYIPQISNETYKSSFSPVSF
QLPTHFVA
Nucleotide sequence
Length: 1,179
>KH2012:KH.L59.1.v1.B.ND4-1
GAAGGCGTAGCACGCGTCAGGTACAAATACCAAGGTCAATCAGCGTGATGTCATTAGTTT
ACGGCAGTCAGCATACCAGAGAACATCTCCATCTTACAATATGTATTCTAATGTAATGGT
TAATCGTCCCTATGCAGCATATGATCCAAGAGAAAGTCTAACAGCTCACGCATCGTTTCT
TCAAGGACACCAACAACCCATTGATTCCAAGTCTTACTCGATGGCTAATCATCCAAGTGC
GTCATATTACCCAGGATATGGGATGATTCCTCATTTTGCTCAATCCTTGGAGTCTCACCT
TCAAGGAATGCACAATTCCAACAGTAGAGAGAATTTCATCCAGTGCAAATATCCGACGCA
TTCGACTCTCACGAATCCGATTGCTTGCCAAAAACGCAAAGGTTTCAAAGCAAAGTACAA
ATTGGTGAATCATATTCGAGTTCATACTGGGGAGAAACCATTTATTTGCCCCTTTCCTGA
TTGTGGTAAAACGTTTGGAAGAAGCGAGAATTTAAAGATCCATCAAAGAACGCACACAGG
TGAACGACCCTTTCCTTGTAAATTTCCCGGATGTGAAAGACGGTTTGCAAACAGTTCCGA
TCGTAAGAAGCATAGTTACATGCACAACACTGAAAAACTTTATGCGTGTAAGTACGAAGG
TTGCGACCGAAGCTACACTCATCCAAGTTCACTACGTAAGCACATACGTATGCATGAATC
CAATGGTGACGTAATCGACAACGGATCCAATCATTCTCCCACGAGCTCGTGTGGTTCAGT
AGAAGATGTAGCTCGAGAACAAAACTCCGTTGAAAATAATTCCGTTTCAACATATTTACC
TCCACGATTTACGTCATCGCCGATTCATGCACCTTTAGCCACTTATGATGCTTCAGAAAA
ACAAAAATTTTCCCGTGTTGAGAAGCAAGCTAAATTCACAGAAGATTTTATGAACCACGG
ACAAGATGTGACATCATCTCCACCTCAATTAAACTTGAACACAGCTTTAACCGAAGATTG
TTACAACAATTACTATATACCTCAAATATCTAATGAAACTTATAAATCTTCCTTTTCTCC
TGTCTCGTTTCAATTACCCACGCATTTTGTTGCGTAAAATGTTTACTCGTTTTTTATTTG
CGGTACTTTATAACAAAATACAATATATCTATGAAACAA
| SMART |
Znf_C2H2_type (IPR013087) - T[124-145] 56.0 - T[151-175] 1.3E-4 - T[181-205] 0.044 - T[211-235] 1.8E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[130-150] 9.203 - T[151-180] 16.955 - T[181-210] 10.408 - T[211-240] 11.24 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[132-188] 4.46E-20 - T[192-236] 5.93E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[153-175] . - T[183-205] . - T[213-235] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 67.424 % | 186 | 5.0E-56 |
| ZIC2_HUMAN | 68.217 % | 184 | 2.52E-53 |
| ZIC3_HUMAN | 68.217 % | 185 | 1.92E-54 |