- Transcript 'KH2012:KH.L4.17.v3.A...'
Transcript Model
Transcript Id
KH2012:KH.L4.17.v3.A.ND1-1
Possible name(s)
SALL1; SALL3
Gene model
Location
KhL4 [179,574 / 193,157]
Amino acid sequence
Length: 877
>KH.L4.17.v3.A.ND1-1
VSFTFGPRFCDPSILYSTESTPNIGATSPNSMKEEERQTNGFPAPDSNHQPLYYEDVARS
SSSPPHHSPPHFQHPEETRSQIFSSHDDTYEEQPLCIQEDEDKPTDVAPGAFPVIQEEKD
EIKTFQSSSPNQSPPRIDPQPPREPFVIPASREEHEDRRSSSETRSSSESRSSELQVIKE
QVKMIQQQHTYQIQMIHYLHWQLNLLSQRQQQNGLPSNEAPTAPPVFNPITQLLGTNPGI
LPPDPARLAMAMSASTSPPFGPSDPQSSFRRASISPPAPEPPRPQQRPMEPQDPPRMEPN
NEAMLRALQQHRQQQQEQIKQTPNPFLFQQQPQSSLPEHVSAMLRNKNLLPKRPEQHPTF
QDRNQVSQSLERTQMIRNEPKHPGQIDNGEEWVKNQCRTCRRVLSCPSALKLHYRTHTGE
RPYQCDLCSRAFTTRGNLRTHYSSVHRRELPPASSSGGSSVSKRGGSAKSESHICPLCSS
IFNDQVGLAQHMQMHAIVNKQQQQNLLAMKQKMIMAPPLPQIEGEKVKTEAVVDLSASGR
RPPSNPPSPVRGYEGGVSERKYRTPDKPENGGFPAIVTEHRGQSGFDALDLSSVSPAPQK
EEFKEVFAENGNTERYQETAQRTEIASAREPDTQRPFFPCGICLRQLESEEDLKEHLMTH
DGGSSCDSPSSSIGSTSGIQEQRGENGEELRMAMKIHTRTHTGEKPFICNVCSRSFTTKG
NLKVHMGTHVWGAGGSRKGRRVSMDNPLMSTWMKNSTNVDAVMPNARPAQQDARANASTA
AASIYQQYAAIAQGIMARNPAEGIPPTHVLNQALAARYLQQPLPIGANQVTTEGSPEASL
SSDGEQEGETPNAISASTAAHEWLWKAYQQRSQGQVN
Nucleotide sequence
Length: 3,232
>KH2012:KH.L4.17.v3.A.ND1-1
TGGCAGATCCCGCGGCGTCCATCGTAGCCTTATCAATACGCTTCGAGATTTTTGCATAAA
CGGCGTGGCGTGCGAGAGAAAAGAGGGACGGAGTGAAAAAGGTTCTCTTCTTTGTTTCTT
TCTTTATGAGGAGCGAGGAGGATTGTTGCTTCATATGCAGAAGCATCACTTGCATGTAAC
ACAGATTAGTTGGGCAGTAGTCGCAATAGTATATTAGTTTATTAAGTTTCCTTCACTTTT
GGACCAAGATTTTGTGACCCGAGTATTCTGTACAGTACAGAATCGACTCCAAACATCGGT
GCTACGTCACCCAACAGCATGAAGGAAGAGGAGCGTCAAACGAACGGTTTTCCGGCCCCG
GATTCGAACCACCAACCACTTTATTACGAAGATGTCGCCAGATCATCCTCTTCTCCTCCT
CATCACTCCCCTCCACATTTCCAACATCCGGAGGAAACAAGGAGCCAAATCTTCTCCTCT
CATGACGACACGTATGAGGAGCAACCTCTCTGCATCCAGGAAGACGAAGACAAACCCACG
GATGTTGCTCCGGGAGCTTTCCCGGTCATCCAGGAGGAAAAAGATGAAATAAAGACTTTC
CAATCATCCTCCCCCAACCAAAGTCCACCCAGGATCGATCCACAACCTCCACGGGAGCCA
TTTGTGATCCCAGCATCCAGAGAGGAGCATGAAGATCGAAGATCATCATCAGAAACTCGA
TCATCTTCCGAGAGCAGATCTTCCGAGCTCCAGGTGATCAAGGAACAAGTTAAGATGATC
CAGCAACAACACACATACCAGATCCAGATGATCCATTACTTGCATTGGCAACTTAACCTT
CTGTCCCAACGACAACAACAAAACGGGTTACCTAGCAACGAAGCCCCCACAGCGCCACCA
GTGTTCAACCCAATCACCCAACTTTTGGGGACAAACCCAGGTATCTTACCTCCAGACCCA
GCGAGACTAGCAATGGCGATGTCAGCATCTACAAGCCCCCCATTCGGCCCCTCTGACCCC
CAATCATCATTCAGACGCGCCTCCATTTCACCCCCTGCTCCAGAGCCACCCCGGCCCCAA
CAGAGACCCATGGAGCCCCAGGACCCCCCACGCATGGAACCCAACAACGAAGCGATGCTA
CGCGCGCTGCAACAACATCGACAACAACAACAAGAACAAATAAAACAAACGCCAAACCCG
TTTTTATTCCAACAACAACCACAATCTTCGCTACCGGAGCATGTATCAGCGATGCTGAGG
AACAAAAACCTCCTCCCAAAGCGTCCTGAGCAACATCCAACCTTCCAGGATCGAAACCAG
GTCTCCCAGTCTTTAGAGAGGACGCAGATGATCCGAAACGAGCCGAAACATCCGGGTCAA
ATCGACAACGGGGAGGAATGGGTAAAGAACCAATGTCGGACTTGTCGTCGTGTTCTAAGT
TGCCCAAGCGCACTCAAGCTACATTACAGAACCCATACAGGCGAACGTCCATACCAATGC
GACTTATGTTCACGAGCCTTTACCACACGTGGCAACCTCCGCACGCATTACAGCAGCGTC
CACCGACGTGAGCTCCCTCCCGCTTCCTCATCAGGAGGCTCCTCCGTGAGCAAGAGAGGA
GGATCTGCTAAATCCGAGAGTCATATTTGTCCTCTTTGTAGCTCCATCTTCAACGATCAA
GTTGGACTCGCACAACACATGCAGATGCACGCGATAGTGAATAAACAGCAGCAACAGAAT
TTGTTGGCTATGAAGCAGAAGATGATAATGGCCCCACCATTGCCACAAATAGAGGGCGAA
AAAGTGAAAACCGAAGCAGTTGTCGATCTTTCGGCGTCTGGTCGTCGCCCCCCCAGCAAC
CCCCCCTCCCCAGTTAGGGGTTACGAAGGTGGGGTCAGTGAAAGGAAGTACCGGACCCCG
GATAAACCCGAGAACGGGGGGTTTCCCGCTATCGTTACCGAGCATAGGGGTCAGAGTGGG
TTCGACGCTTTGGATCTCAGCAGTGTTTCCCCGGCACCGCAGAAAGAGGAATTTAAAGAA
GTTTTTGCAGAAAACGGAAACACTGAAAGATACCAGGAGACGGCCCAGCGTACGGAAATA
GCTTCAGCCCGCGAACCTGACACCCAGCGGCCGTTCTTTCCATGCGGGATTTGCCTCCGA
CAACTTGAGAGTGAGGAAGATCTGAAGGAACATCTGATGACGCATGATGGGGGGTCGTCA
TGTGACAGTCCGTCATCGTCTATTGGGTCAACATCCGGCATCCAAGAGCAAAGAGGAGAG
AACGGAGAGGAGCTCAGAATGGCTATGAAGATCCACACACGAACGCACACCGGTGAAAAA
CCTTTCATTTGCAACGTGTGCAGTCGATCGTTCACCACCAAGGGCAACTTGAAGGTACAT
ATGGGAACCCACGTGTGGGGGGCTGGGGGCTCCAGGAAAGGACGACGTGTGTCCATGGAT
AATCCTCTTATGTCAACATGGATGAAAAACTCAACGAACGTTGACGCAGTGATGCCGAAT
GCAAGGCCAGCACAACAGGACGCGAGGGCTAATGCATCGACAGCGGCAGCTTCAATTTAC
CAGCAATACGCCGCCATCGCCCAAGGTATTATGGCTCGCAACCCAGCTGAGGGGATTCCC
CCAACCCATGTATTGAACCAAGCATTGGCAGCAAGATACCTTCAACAACCCCTTCCTATC
GGTGCCAACCAAGTGACAACTGAAGGTTCACCTGAAGCGAGTCTTTCATCCGACGGCGAG
CAAGAAGGGGAAACCCCTAACGCGATATCCGCATCAACTGCTGCTCACGAATGGTTGTGG
AAAGCTTACCAACAACGATCGCAAGGCCAGGTAAATTGAAGAACAAACGAAATTCTTTTA
ATTTTCGAACTTCCTGTGACGACATAAATGAACTCCTGACGTCACAATCATTGCTGAAAA
TCCCCACAAACGTCTTTACTACGTCACAAACAATATTGTGATGCTTCCGATTACGAACAT
TCTGTATGACGTCAAAATGACGTAACAATGAACTATGTTGTAAATATTGTGTGTGTGTTC
TAACGTTGCTAAATCTTTGGTGCTTTCCCTGAAATGAAACCACGCAGTCAACCAGCTGCT
CCGTACAATAGGCTGCTGCTTATTTTAAAAACTCGACTTTTTGGTGCTAACTGTTTTGTG
TTCGTTTGAAAATAAATCGTTTTGAAACAAATAATTAAATTGCTTGTTGTTT
| SMART |
Znf_C2H2_type (IPR013087) - T[395-417] 4.5 - T[423-446] 3.4E-4 - T[473-495] 0.0031 - T[638-660] 0.18 - T[707-729] 1.7E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[395-422] 12.986 - T[423-451] 13.339 - T[473-496] 8.6 - T[638-665] 9.224 - T[707-729] 10.845 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[397-417] . - T[425-446] . - T[475-495] . - T[640-660] . - T[709-729] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[406-451] 3.8E-13 - T[472-495] 3.91E-5 - T[633-660] 3.91E-5 - T[694-729] 7.03E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SALL1_HUMAN | 41.83 % | 112 | 4.19E-25 |
| SALL3_HUMAN | 41.912 % | 108 | 4.52E-24 |
| SALL4_HUMAN | 48.515 % | 105 | 5.58E-23 |