- Transcript 'KH2012:KH.L18.139.v1...' >
- Transcript 'KH2012:KH.L4.17.v2.A...' >
- Transcript 'KH2012:KH.L4.17.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.L4.17.v2.A.ND1-1
Possible name(s)
SALL1; SALL3
Gene model
Location
KhL4 [179,574 / 193,157]
Amino acid sequence
Length: 915
>KH.L4.17.v2.A.ND1-1
VSFTFGPRFCDPSILYSTESTPNIGATSPNSMKEEERQTNGFPAPDSNHQPLYYEDVARS
SSSPPHHSPPHFQHPEETRSQIFSSHDDTYEEQPLCIQEDEDKPTDVAPGAFPVIQEEKD
EIKTFQSSSPNQSPPRIDPQPPREPFVIPASREEHEDRRSSSETRSSSESRSSELQVIKE
QVKMIQQQHTYQIQMIHYLHWQLNLLSQRQQQNGLPSNEAPTAPPVFNPITQLLGTNPGI
LPPDPARLAMAMSASTSPPFGPSDPQSSFRRASISPPAPEPPRPQQRPMEPQDPPRMEPN
NEAMLRALQQHRQQQQEQIKQTPNPFLFQQQPQSSLPEHVSAMLRNKNLLPKRPEQHPTF
QDRNQVSQSLERTQMIRNEPKHPGQIDNGEEWVKNQCRTCRRVLSCPSALKLHYRTHTGE
RPYQCDLCSRAFTTRGNLRTHYSSVHRRELPPASSSGGSSVSKRGGSAKSESHICPLCSS
IFNDQVGLAQHMQMHAIVNKQQQQNLLAMKQKMIMAPPLPQIEGEKVKTEAVVDLSASGR
RPPSNPPSPVRGYEGGVSERKYRTPDKPENGGFPAIVTEHRGQSGFDALDLSSVSPAPQK
EEFKEVFAENGNTERYQETAQRTEIASAREPDTQRPFFPCGICLRQLESEEDLKEHLMTH
DGGSSCDSPSSSIGSTSGIQEQRGENGEELRMAMKRPLEIDETSQLPDAKRNNVPRHWCN
ICKKQFSSASSLQIHTRTHTGEKPFICNVCSRSFTTKGNLKVHMGTHVWGAGGSRKGRRV
SMDNPLMSTWMKNSTNVDAVMPNARPAQQDARANASTAAASIYQQYAAIAQGIMARNPAE
GIPPTHVLNQALAARYLQQPLPIGANQVTTEGSPEASLSSDGEQEGETPNAISASTAAHE
WLWKAYQQRSQGQVN
Nucleotide sequence
Length: 3,346
>KH2012:KH.L4.17.v2.A.ND1-1
TGGCAGATCCCGCGGCGTCCATCGTAGCCTTATCAATACGCTTCGAGATTTTTGCATAAA
CGGCGTGGCGTGCGAGAGAAAAGAGGGACGGAGTGAAAAAGGTTCTCTTCTTTGTTTCTT
TCTTTATGAGGAGCGAGGAGGATTGTTGCTTCATATGCAGAAGCATCACTTGCATGTAAC
ACAGATTAGTTGGGCAGTAGTCGCAATAGTATATTAGTTTATTAAGTTTCCTTCACTTTT
GGACCAAGATTTTGTGACCCGAGTATTCTGTACAGTACAGAATCGACTCCAAACATCGGT
GCTACGTCACCCAACAGCATGAAGGAAGAGGAGCGTCAAACGAACGGTTTTCCGGCCCCG
GATTCGAACCACCAACCACTTTATTACGAAGATGTCGCCAGATCATCCTCTTCTCCTCCT
CATCACTCCCCTCCACATTTCCAACATCCGGAGGAAACAAGGAGCCAAATCTTCTCCTCT
CATGACGACACGTATGAGGAGCAACCTCTCTGCATCCAGGAAGACGAAGACAAACCCACG
GATGTTGCTCCGGGAGCTTTCCCGGTCATCCAGGAGGAAAAAGATGAAATAAAGACTTTC
CAATCATCCTCCCCCAACCAAAGTCCACCCAGGATCGATCCACAACCTCCACGGGAGCCA
TTTGTGATCCCAGCATCCAGAGAGGAGCATGAAGATCGAAGATCATCATCAGAAACTCGA
TCATCTTCCGAGAGCAGATCTTCCGAGCTCCAGGTGATCAAGGAACAAGTTAAGATGATC
CAGCAACAACACACATACCAGATCCAGATGATCCATTACTTGCATTGGCAACTTAACCTT
CTGTCCCAACGACAACAACAAAACGGGTTACCTAGCAACGAAGCCCCCACAGCGCCACCA
GTGTTCAACCCAATCACCCAACTTTTGGGGACAAACCCAGGTATCTTACCTCCAGACCCA
GCGAGACTAGCAATGGCGATGTCAGCATCTACAAGCCCCCCATTCGGCCCCTCTGACCCC
CAATCATCATTCAGACGCGCCTCCATTTCACCCCCTGCTCCAGAGCCACCCCGGCCCCAA
CAGAGACCCATGGAGCCCCAGGACCCCCCACGCATGGAACCCAACAACGAAGCGATGCTA
CGCGCGCTGCAACAACATCGACAACAACAACAAGAACAAATAAAACAAACGCCAAACCCG
TTTTTATTCCAACAACAACCACAATCTTCGCTACCGGAGCATGTATCAGCGATGCTGAGG
AACAAAAACCTCCTCCCAAAGCGTCCTGAGCAACATCCAACCTTCCAGGATCGAAACCAG
GTCTCCCAGTCTTTAGAGAGGACGCAGATGATCCGAAACGAGCCGAAACATCCGGGTCAA
ATCGACAACGGGGAGGAATGGGTAAAGAACCAATGTCGGACTTGTCGTCGTGTTCTAAGT
TGCCCAAGCGCACTCAAGCTACATTACAGAACCCATACAGGCGAACGTCCATACCAATGC
GACTTATGTTCACGAGCCTTTACCACACGTGGCAACCTCCGCACGCATTACAGCAGCGTC
CACCGACGTGAGCTCCCTCCCGCTTCCTCATCAGGAGGCTCCTCCGTGAGCAAGAGAGGA
GGATCTGCTAAATCCGAGAGTCATATTTGTCCTCTTTGTAGCTCCATCTTCAACGATCAA
GTTGGACTCGCACAACACATGCAGATGCACGCGATAGTGAATAAACAGCAGCAACAGAAT
TTGTTGGCTATGAAGCAGAAGATGATAATGGCCCCACCATTGCCACAAATAGAGGGCGAA
AAAGTGAAAACCGAAGCAGTTGTCGATCTTTCGGCGTCTGGTCGTCGCCCCCCCAGCAAC
CCCCCCTCCCCAGTTAGGGGTTACGAAGGTGGGGTCAGTGAAAGGAAGTACCGGACCCCG
GATAAACCCGAGAACGGGGGGTTTCCCGCTATCGTTACCGAGCATAGGGGTCAGAGTGGG
TTCGACGCTTTGGATCTCAGCAGTGTTTCCCCGGCACCGCAGAAAGAGGAATTTAAAGAA
GTTTTTGCAGAAAACGGAAACACTGAAAGATACCAGGAGACGGCCCAGCGTACGGAAATA
GCTTCAGCCCGCGAACCTGACACCCAGCGGCCGTTCTTTCCATGCGGGATTTGCCTCCGA
CAACTTGAGAGTGAGGAAGATCTGAAGGAACATCTGATGACGCATGATGGGGGGTCGTCA
TGTGACAGTCCGTCATCGTCTATTGGGTCAACATCCGGCATCCAAGAGCAAAGAGGAGAG
AACGGAGAGGAGCTCAGAATGGCTATGAAGCGCCCGTTGGAAATTGACGAAACCTCCCAA
CTTCCCGACGCCAAACGTAACAATGTTCCCCGACACTGGTGTAACATTTGCAAGAAACAA
TTCTCGTCGGCGAGTTCGCTGCAGATCCACACACGAACGCACACCGGTGAAAAACCTTTC
ATTTGCAACGTGTGCAGTCGATCGTTCACCACCAAGGGCAACTTGAAGGTACATATGGGA
ACCCACGTGTGGGGGGCTGGGGGCTCCAGGAAAGGACGACGTGTGTCCATGGATAATCCT
CTTATGTCAACATGGATGAAAAACTCAACGAACGTTGACGCAGTGATGCCGAATGCAAGG
CCAGCACAACAGGACGCGAGGGCTAATGCATCGACAGCGGCAGCTTCAATTTACCAGCAA
TACGCCGCCATCGCCCAAGGTATTATGGCTCGCAACCCAGCTGAGGGGATTCCCCCAACC
CATGTATTGAACCAAGCATTGGCAGCAAGATACCTTCAACAACCCCTTCCTATCGGTGCC
AACCAAGTGACAACTGAAGGTTCACCTGAAGCGAGTCTTTCATCCGACGGCGAGCAAGAA
GGGGAAACCCCTAACGCGATATCCGCATCAACTGCTGCTCACGAATGGTTGTGGAAAGCT
TACCAACAACGATCGCAAGGCCAGGTAAATTGAAGAACAAACGAAATTCTTTTAATTTTC
GAACTTCCTGTGACGACATAAATGAACTCCTGACGTCACAATCATTGCTGAAAATCCCCA
CAAACGTCTTTACTACGTCACAAACAATATTGTGATGCTTCCGATTACGAACATTCTGTA
TGACGTCAAAATGACGTAACAATGAACTATGTTGTAAATATTGTGTGTGTGTTCTAACGT
TGCTAAATCTTTGGTGCTTTCCCTGAAATGAAACCACGCAGTCAACCAGCTGCTCCGTAC
AATAGGCTGCTGCTTATTTTAAAAACTCGACTTTTTGGTGCTAACTGTTTTGTGTTCGTT
TGAAAATAAATCGTTTTGAAACAAATAATTAAATTGCTTGTTGTTT
| SMART |
Znf_C2H2_type (IPR013087) - T[395-417] 4.5 - T[423-446] 3.4E-4 - T[473-495] 0.0031 - T[638-660] 0.18 - T[717-739] 0.16 - T[745-767] 1.7E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[395-422] 12.986 - T[423-451] 13.339 - T[473-496] 8.6 - T[638-665] 9.224 - T[717-744] 15.168 - T[745-767] 10.845 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[397-417] . - T[425-446] . - T[475-495] . - T[640-660] . - T[719-739] . - T[747-767] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[406-451] 3.91E-13 - T[472-495] 4.12E-5 - T[633-660] 4.12E-5 - T[717-767] 1.3E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SALL1_HUMAN | 35.918 % | 133 | 1.17E-31 |
| SALL3_HUMAN | 32.886 % | 131 | 4.43E-31 |
| SALL4_HUMAN | 40.8 % | 106 | 3.07E-23 |