- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.C13.193.v1...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Clone 'cima879013' >
- Transcript 'KH2012:KH.L20.27.v2....'
Transcript Model
Transcript Id
KH2012:KH.L20.27.v2.A.SL1-1
Possible name(s)
SNX18; SNX30; SNX4
Gene model
Location
KhL20 [423,309 / 425,732]
Amino acid sequence
Length: 443
>KH.L20.27.v2.A.SL1-1
ISMEPAEENDIFEEEGVHISEPAKKSDENSPDVESMQDTLLSQFKITVSDPEKRTKPSGI
KMQETFVVYLIETTPKNAESSLIEEVTSLWRRYSEFELLRNYLVVIYPAVIVPPLPEKRA
NFIWNKITATDTFDIDFLERRRAGLESFLHRIAGHRKLGKDKIVKHFITKEESWREELMA
TGFQAKADSWLKKVNASLRVREPNLRYEQLKCYANNLQTNATALLKVRAKLAERVYGIYK
IHSNYSRVFKEWALVEDSPLKEALQKSSIDVDAYGISIDNLIDEEDQIAEQLKEYLYFAD
SLKTICKKHEALQYDVEWYESSLANALTEKKQLLSGPPKTFSFSGLKARLLGADAADVTE
TRLEVLETNITDLEKDLEKHRMIAKEFLDEADEEVELFKTRKVMDLREIFVSYAVLQIKM
NKEGAAYWKKIKTPFAAILENQA
Nucleotide sequence
Length: 1,852
>KH2012:KH.L20.27.v2.A.SL1-1
TAGCAAAGATTGATCTAAATATAAAAGTTTTAAATAAGTATGGAGCCTGCTGAAGAAAAT
GATATTTTTGAAGAAGAAGGCGTTCATATCTCCGAACCAGCCAAAAAAAGTGATGAAAAT
TCACCAGATGTTGAATCCATGCAAGATACATTACTCAGTCAGTTTAAAATCACAGTCAGC
GACCCTGAAAAGCGGACAAAACCAAGTGGAATCAAAATGCAAGAAACCTTTGTTGTGTAT
CTTATCGAAACTACCCCGAAAAATGCCGAGTCATCACTTATAGAGGAAGTGACATCACTA
TGGCGGCGATACAGCGAATTTGAGCTGCTTAGAAATTATCTTGTTGTCATTTACCCTGCT
GTTATTGTGCCACCGTTGCCGGAAAAGCGGGCAAATTTTATCTGGAACAAAATAACAGCT
ACTGATACTTTTGACATCGATTTTCTGGAGCGTAGAAGAGCAGGCCTGGAGTCTTTCCTT
CACCGTATAGCAGGGCATAGGAAGTTGGGCAAGGATAAAATTGTGAAGCATTTTATAACA
AAGGAGGAATCATGGAGGGAGGAATTAATGGCAACTGGGTTCCAAGCCAAAGCTGACTCT
TGGCTGAAGAAAGTGAACGCATCTTTGAGAGTGAGAGAACCAAACTTGAGGTATGAGCAA
TTGAAATGTTACGCCAACAATCTCCAAACCAACGCAACAGCGCTTCTAAAAGTTCGTGCA
AAGTTAGCAGAGCGAGTGTATGGGATTTACAAAATTCATTCCAACTACAGCCGTGTTTTT
AAAGAATGGGCTCTGGTTGAAGACTCACCATTAAAGGAAGCATTACAGAAGTCCAGCATT
GATGTTGATGCTTATGGAATATCTATTGATAATCTTATAGATGAAGAAGACCAGATTGCT
GAGCAGTTAAAGGAATATCTTTATTTTGCTGATTCCCTTAAGACAATATGTAAGAAGCAC
GAAGCCTTGCAGTACGATGTTGAATGGTATGAAAGCTCACTGGCCAACGCTCTAACTGAG
AAGAAACAGCTTTTATCAGGCCCTCCTAAGACCTTCTCATTCAGCGGGTTAAAAGCAAGG
CTGCTTGGTGCAGATGCTGCTGATGTTACTGAGACAAGGCTTGAAGTCTTGGAGACGAAC
ATCACTGATCTGGAGAAGGATCTCGAAAAACATCGCATGATCGCGAAAGAGTTTTTGGAC
GAAGCGGATGAAGAAGTAGAGTTGTTTAAAACAAGAAAGGTCATGGACCTTAGGGAGATC
TTTGTCAGTTATGCAGTTCTTCAGATTAAAATGAACAAAGAGGGGGCCGCTTACTGGAAG
AAAATTAAAACGCCGTTCGCAGCGATTTTGGAGAACCAGGCCTAATTTGGGAACGCCAAA
AGCACATTGTTTTTTTTATTAAATTGCTAGAAATGGAGTTCTAATGAAAGATTCAAACGC
CGTTTGCAGCCATTATGGGAAACTAGTCTTTCATTTAATGAGGTTTCCATCTTACCCCCC
TAACCATACACCCACTGTGGGGTAAGTACAGCAATACAAATGCTGCTGATTTTGATCCTA
CTGTAGTTCAAATCACTCAAGTGAACATCTGATTATGTGTGCAATATTACATATGTATAA
CAATCTGTATTGTAACATAATAATAAATATAGTTGTAGTAACTTTGGTCTTTATACAGAT
ATCTATGTTTTAACTTTTGTAAAGTATTTCTTCACAGCAAGGACACATGCAGTTAAAGCT
TCTACTAAATGTATGTCTTGTACACCAGTTGAAATAACATACATAGCGTGCTCTGCTACA
TGCTCATCAGATAAGTTGCCAGCAGTCTTGGGCAGTAGTGGCTCATTTGGGT
| PANTHER |
SNX4 (IPR034783) - T[36-427] 1.1E-124 |
| Gene3D |
PX_dom_sf (IPR036871) - T[38-195] 2.5E-31 |
| SMART |
Phox (IPR001683) - T[41-171] 1.8E-18 |
| CDD |
PX_SNX4 (IPR034902) - T[44-171] 5.44583E-74 |
| SUPERFAMILY |
PX_dom_sf (IPR036871) - T[44-172] 6.15E-24 |
| Pfam |
Phox (IPR001683) - T[45-169] 2.0E-18 |
| ProSiteProfiles |
Phox (IPR001683) - T[47-175] 16.15 |
| CDD |
SNX4_BAR (IPR037430) - T[192-436] 2.78619E-94 |
| Gene3D |
AH/BAR_dom_sf (IPR027267) - T[198-438] 2.9E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNX30_HUMAN | 24.908 % | 84.7 | 9.57E-18 |
| SNX4_HUMAN | 43.925 % | 377 | 6.31E-128 |