- Transcript 'KH2012:KH.L170.48.v1...'
Transcript Model
Transcript Id
KH2012:KH.L170.48.v1.A.SL2-1
Possible name(s)
NEDD1; WDR5; WDR5B
Gene model
Location
KhL170 [78,655 / 85,919]
Amino acid sequence
Length: 681
>KH.L170.48.v1.A.SL2-1
DCCSSKLLTEFNNFFFEMSTSGPYFATAGDDIKIWDAQAFQVVKQFNYHKGNVKDIAWSR
DNTMMCSASASGDKLLVTDCQLNQQTKPKIVAEHAIDENQTCVRVSHSGRRMYSGGMGGD
VNVWERETGQLKKSYKDTHSSPVTCIAVNEYESHVASGSNKGDIVIRNLGSNATSKPKLK
SEGQAVRSMAFSPWKHSLVGMTMDDGSIHLWDTLQSALYHEFVEIHNAPAMSLSFSHFND
LLVSSVGLDKKLIIYDTKSKKYLNKASLDQPLTSVAFMLDGVTLIAGSSLGQIYQLDLRS
MSKPVKEALGHSTSVQRVAVQNSVKVKKERSSSKRRVVTEKSSKTVSSDSESKICTPAPT
PIIGLHDRPSQRSLPPSSGKPTTTSTRPQLPNTSTFLTNTGSPPIAVSTPFPNISTPAAH
TLRHHADDYGDLISPVRDDAFGRNDHETSAGQQGSFSFSTTTGSFNDDIVSPVANHTKAV
KGFQYHGIAGKQSNTRTSPHPLRQSSNPGLNGHSNKAENQTKPAELSNHQRIKMEKLDVT
DGGSVSLQTTLHHSINESKKQDPAPDSSQVRIEETKSTVEDHKEKAETSNQAVASSKPDA
ASFQYQAEFIRNIVKDLVDEMRDDVRSQVNELSTQMVKLSIFQEDLFRELLLQNRCGINE
QLLEELERVKQENERLKRMLR
Nucleotide sequence
Length: 3,838
>KH2012:KH.L170.48.v1.A.SL2-1
ACGACGATCAGTGATGTTTTGCTGGTAATGTTTATATTAAAGAGTATCTTATACATTCCC
GTATTTAAGAATCTGCGCTGTATGAGCTTTACTACCGCTATGCAGAAAAACATGGAAAAA
ACAGACAAATTTTACAACACTGACGCTTTAAATGAGTTGTCCAAAGAAGACTTGGTGAAA
CTTGCCATAAACTTTCAAGGTAAATACCGACAAGTTTTAAATAAAAACCAGAGTTCGAGC
TCGAAGTTGCAACAAATGATAAAACGATTCCATCCGAGAAGAAAACGTAAGATGACGAAG
ATGGTTGATTTCGAATCTTGCATGTATAGAAGAATAGCATTGAAAGTTGCCTATTTAGGC
TGGGACTATGAGGGCTTGCAAGAGAATGAAAACTTGGATGACACAATTGAGCGCATTCTA
CGAGAAGCTTTAAGAAGGGTGAGGCTCGTTCCTGCAGATCGTTCTATTTATTTTTCCAGG
TGCGGACGTACGGATAAAGAAGTTAGTGCTTTCAGTCAAGTTATTGTTGTAAAAGTGAGG
TCACTTTTAGCATCTGGGCCAGAAATCAATGACGAAAATCCAATTAAAATTGAAGAAAAT
GAATATGAGTTTACTGGGATGCTTAATCGTGTTCTACCCGCAGAAATTAAGGTCCTGGCA
TGGGCTCCAGTTGAGAATGAAGAGTTTAGTGCGAGAAAGCATTGCTTGGGTAGGGAGTAT
CGATATTATTTCCACAGAGGTAATGCGGATATTACGGCGATGAATGAAGCGGCAAAGTTA
TTCTGTGGGCTGCATGATTTTCGTAACTTCGGTAAAGTTAATGTTGTGAATTGTGTTAAC
TATGTGCGGAGGATCAACCATTTTGAAATTAGTTTTTGTGATGAGGAAAAGGGAGCCGGA
CCGTATCGCATGTGCTTTGCAAGGATTATTGGATCTGGGTTTATTTATCATCAAGTAAGG
AGCATGATGGCGGTTCTTTATCTTATTGGTGTTGGTCTTGAAAAGCCAGAAATTATCACT
GAACTTTTTAATATTGAAAAGCATCCAAAAAAGCCGTGGTTTGGCTTGGTTAAGCCGCAT
GCGTTGGTGTTATTCAACTCTATCTACCCGGACCTTAAATGGAGAATTGTCAACCAAGAT
GCACAACGTGTTTTAGAACATTTTCAAAACTTCTGGGGAAACTTGGCCTTAAAATCGCAT
CTTACTTTTAAGCTTTTAAAGTTAGTCGAAAATGATGAAACAATCGCTGTGGGTGGGGAA
GATGGTCAAACTCATACAACTTACAAACAACTGGCATGTGATCTGCAGAGAGATACATTA
CTGCACGGCGTAAACAAAAAACTTCTGGTCGATTGTTACAACCTGAATAAGGATAGCTAT
AAAAAGATAATGGACCGTCCTGTAGGGAAGAGTTTGGAGGAACATCTGGAAGTTGCGAGG
AAGAAGAAGAGGAAGATTGCCCCGAGTAATTCAAACTTTAAACTTCCTCCAATGGAGGTT
GAAGCAACGGAAGATATTTCTTAATAAATATTGTAATGCATTTGTGTCATTAAATTTATT
AAACTCAAACACTTTTATCAACCCTAATATTTTAATAGTGTCAATATGGTTTATTTTTTG
GGGGGAATTAGTCTTTTAAAACTGATGTTACTTTTAATCTGCAGCAATAATTTGTTGCAG
TTAGCATATGGTATAGAAGTCTAAGATTGCTGCTCGTCAAAACTGCTAACTGAGTTTAAT
AATTTCTTTTTTGAAATGTCTACCTCTGGCCCATATTTCGCAACAGCAGGCGATGATATT
AAAATATGGGATGCTCAGGCCTTTCAGGTGGTCAAGCAGTTCAACTATCATAAAGGAAAT
GTGAAGGATATAGCATGGAGTAGGGACAACACGATGATGTGCAGTGCTTCTGCTTCTGGT
GACAAGCTCCTGGTAACAGATTGTCAGCTGAACCAACAAACCAAACCAAAGATTGTGGCC
GAACACGCAATAGATGAGAATCAGACCTGTGTACGAGTATCTCACAGTGGGAGAAGAATG
TATTCAGGAGGTATGGGGGGCGATGTTAATGTGTGGGAACGTGAAACAGGACAACTCAAG
AAATCTTACAAGGACACTCACTCAAGCCCTGTAACTTGCATCGCCGTGAATGAGTACGAA
TCCCACGTTGCATCAGGTAGCAACAAGGGTGATATTGTGATCAGGAATCTTGGCTCAAAC
GCAACCAGTAAACCGAAGTTAAAAAGTGAGGGACAAGCAGTTCGGTCGATGGCATTTTCA
CCTTGGAAGCATTCACTTGTTGGCATGACAATGGATGATGGCAGCATCCATTTATGGGAT
ACTTTACAATCTGCATTATATCATGAGTTTGTTGAAATACATAACGCACCAGCCATGTCA
TTATCGTTTTCACATTTTAATGATTTGCTCGTCTCTTCTGTTGGACTTGACAAGAAACTT
ATTATATACGACACCAAAAGCAAAAAGTATTTAAACAAAGCAAGTTTGGACCAACCTCTC
ACTTCAGTAGCGTTTATGTTAGATGGTGTAACACTCATTGCTGGGTCATCGCTTGGTCAA
ATCTACCAACTAGACCTCCGATCAATGAGCAAGCCAGTCAAGGAGGCGCTTGGCCACTCC
ACCTCGGTCCAGAGGGTCGCGGTTCAAAACTCAGTAAAGGTTAAAAAAGAGCGATCTTCA
AGCAAACGAAGAGTTGTGACCGAAAAATCATCGAAAACGGTTTCCTCTGACAGCGAAAGT
AAAATTTGCACCCCTGCACCTACTCCTATCATAGGTTTACATGATCGTCCAAGCCAGCGC
TCTTTACCGCCCTCATCTGGCAAACCAACAACAACGAGTACTCGTCCACAGTTGCCGAAT
ACTTCTACTTTTTTAACCAATACAGGTTCACCCCCCATAGCAGTATCCACTCCTTTCCCC
AACATATCAACCCCAGCAGCACACACATTAAGACATCATGCTGATGACTATGGGGACTTG
ATATCTCCTGTAAGAGACGATGCTTTTGGTAGGAACGATCACGAAACATCCGCAGGGCAA
CAAGGGTCGTTCTCCTTTTCAACAACAACTGGGTCCTTTAACGACGATATAGTTTCACCT
GTTGCGAACCACACGAAGGCAGTAAAGGGGTTTCAATATCATGGCATTGCCGGTAAACAA
AGCAACACACGTACGTCGCCCCATCCATTACGACAATCCAGCAACCCCGGTCTTAATGGG
CACAGTAATAAAGCAGAAAACCAAACCAAGCCAGCAGAGCTTTCCAACCACCAGAGAATA
AAGATGGAAAAGTTAGATGTAACAGATGGTGGATCTGTTTCATTACAGACTACACTGCAT
CATTCAATTAATGAAAGTAAAAAGCAAGATCCTGCACCTGATTCATCTCAAGTTAGGATA
GAAGAAACCAAATCCACTGTCGAGGATCATAAAGAGAAAGCTGAGACCTCTAACCAAGCT
GTAGCTAGTTCGAAACCAGATGCAGCTTCCTTTCAATACCAAGCAGAATTTATTCGGAAT
ATTGTTAAAGATCTAGTAGATGAAATGAGAGATGATGTTCGCTCTCAAGTCAACGAGCTT
TCTACCCAGATGGTGAAACTTTCCATCTTCCAGGAGGATCTCTTCCGGGAGTTACTTCTC
CAGAACAGATGCGGGATCAATGAGCAATTATTGGAAGAGCTGGAGAGAGTGAAACAGGAG
AACGAAAGATTAAAACGGATGCTAAGATGAAACACTTCTCTTGCCTTGGCTGTGATGTGG
TCTAGTGCCTTTCTTTATACTTTACTTATTAGAGAATAAATTTATTGCGTATAAAAAA
| SMART |
WD40_repeat (IPR001680) - T[4-36] 45.0 - T[39-79] 0.46 - T[87-125] 2.1 - T[128-168] 0.0039 - T[172-212] 4.0 - T[215-256] 1.3 - T[259-297] 230.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[15-73] 3.2E-10 - T[74-208] 4.5E-18 - T[209-353] 2.8E-14 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[19-319] 1.6E-48 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[32-265] 18.695 |
| Pfam |
WD40_repeat (IPR001680) - T[130-166] 0.04 - T[183-212] 0.15 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[199-213] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NEDD1_HUMAN | 31.034 % | 291 | 6.08E-89 |