- Molecular Tool 'Cirobu.Bra>MRFaNN (Izzi 2013)' >
- Molecular Tool 'cicl19m16-MO (Hamada's MO)' >
- Transcript 'KH2012:KH.C8.912.v1....' >
- Transcript 'KH2012:KH.L170.48.v1...'
Transcript Model
Transcript Id
KH2012:KH.L170.48.v1.A.ND1-1
Possible name(s)
NEDD1; WDR5; WDR5B
Gene model
Location
KhL170 [78,655 / 85,983]
Amino acid sequence
Length: 681
>KH.L170.48.v1.A.ND1-1
DCCSSKLLTEFNNFFFEMSTSGPYFATAGDDIKIWDAQAFQVVKQFNYHKGNVKDIAWSR
DNTMMCSASASGDKLLVTDCQLNQQTKPKIVAEHAIDENQTCVRVSHSGRRMYSGGMGGD
VNVWERETGQLKKSYKDTHSSPVTCIAVNEYESHVASGSNKGDIVIRNLGSNATSKPKLK
SEGQAVRSMAFSPWKHSLVGMTMDDGSIHLWDTLQSALYHEFVEIHNAPAMSLSFSHFND
LLVSSVGLDKKLIIYDTKSKKYLNKASLDQPLTSVAFMLDGVTLIAGSSLGQIYQLDLRS
MSKPVKEALGHSTSVQRVAVQNSVKVKKERSSSKRRVVTEKSSKTVSSDSESKICTPAPT
PIIGLHDRPSQRSLPPSSGKPTTTSTRPQLPNTSTFLTNTGSPPIAVSTPFPNISTPAAH
TLRHHADDYGDLISPVRDDAFGRNDHETSAGQQGSFSFSTTTGSFNDDIVSPVANHTKAV
KGFQYHGIAGKQSNTRTSPHPLRQSSNPGLNGHSNKAENQTKPAELSNHQRIKMEKLDVT
DGGSVSLQTTLHHSINESKKQDPAPDSSQVRIEETKSTVEDHKEKAETSNQAVASSKPDA
ASFQYQAEFIRNIVKDLVDEMRDDVRSQVNELSTQMVKLSIFQEDLFRELLLQNRCGINE
QLLEELERVKQENERLKRMLR
Nucleotide sequence
Length: 3,902
>KH2012:KH.L170.48.v1.A.ND1-1
GTTGTTTTGGTTTGGTTTTGTGCATATAGTAATAAATAAAACTAACTTGTTTAAATTAAT
CAAGACGACGATCAGTGATGTTTTGCTGGTAATGTTTATATTAAAGAGTATCTTATACAT
TCCCGTATTTAAGAATCTGCGCTGTATGAGCTTTACTACCGCTATGCAGAAAAACATGGA
AAAAACAGACAAATTTTACAACACTGACGCTTTAAATGAGTTGTCCAAAGAAGACTTGGT
GAAACTTGCCATAAACTTTCAAGGTAAATACCGACAAGTTTTAAATAAAAACCAGAGTTC
GAGCTCGAAGTTGCAACAAATGATAAAACGATTCCATCCGAGAAGAAAACGTAAGATGAC
GAAGATGGTTGATTTCGAATCTTGCATGTATAGAAGAATAGCATTGAAAGTTGCCTATTT
AGGCTGGGACTATGAGGGCTTGCAAGAGAATGAAAACTTGGATGACACAATTGAGCGCAT
TCTACGAGAAGCTTTAAGAAGGGTGAGGCTCGTTCCTGCAGATCGTTCTATTTATTTTTC
CAGGTGCGGACGTACGGATAAAGAAGTTAGTGCTTTCAGTCAAGTTATTGTTGTAAAAGT
GAGGTCACTTTTAGCATCTGGGCCAGAAATCAATGACGAAAATCCAATTAAAATTGAAGA
AAATGAATATGAGTTTACTGGGATGCTTAATCGTGTTCTACCCGCAGAAATTAAGGTCCT
GGCATGGGCTCCAGTTGAGAATGAAGAGTTTAGTGCGAGAAAGCATTGCTTGGGTAGGGA
GTATCGATATTATTTCCACAGAGGTAATGCGGATATTACGGCGATGAATGAAGCGGCAAA
GTTATTCTGTGGGCTGCATGATTTTCGTAACTTCGGTAAAGTTAATGTTGTGAATTGTGT
TAACTATGTGCGGAGGATCAACCATTTTGAAATTAGTTTTTGTGATGAGGAAAAGGGAGC
CGGACCGTATCGCATGTGCTTTGCAAGGATTATTGGATCTGGGTTTATTTATCATCAAGT
AAGGAGCATGATGGCGGTTCTTTATCTTATTGGTGTTGGTCTTGAAAAGCCAGAAATTAT
CACTGAACTTTTTAATATTGAAAAGCATCCAAAAAAGCCGTGGTTTGGCTTGGTTAAGCC
GCATGCGTTGGTGTTATTCAACTCTATCTACCCGGACCTTAAATGGAGAATTGTCAACCA
AGATGCACAACGTGTTTTAGAACATTTTCAAAACTTCTGGGGAAACTTGGCCTTAAAATC
GCATCTTACTTTTAAGCTTTTAAAGTTAGTCGAAAATGATGAAACAATCGCTGTGGGTGG
GGAAGATGGTCAAACTCATACAACTTACAAACAACTGGCATGTGATCTGCAGAGAGATAC
ATTACTGCACGGCGTAAACAAAAAACTTCTGGTCGATTGTTACAACCTGAATAAGGATAG
CTATAAAAAGATAATGGACCGTCCTGTAGGGAAGAGTTTGGAGGAACATCTGGAAGTTGC
GAGGAAGAAGAAGAGGAAGATTGCCCCGAGTAATTCAAACTTTAAACTTCCTCCAATGGA
GGTTGAAGCAACGGAAGATATTTCTTAATAAATATTGTAATGCATTTGTGTCATTAAATT
TATTAAACTCAAACACTTTTATCAACCCTAATATTTTAATAGTGTCAATATGGTTTATTT
TTTGGGGGGAATTAGTCTTTTAAAACTGATGTTACTTTTAATCTGCAGCAATAATTTGTT
GCAGTTAGCATATGGTATAGAAGTCTAAGATTGCTGCTCGTCAAAACTGCTAACTGAGTT
TAATAATTTCTTTTTTGAAATGTCTACCTCTGGCCCATATTTCGCAACAGCAGGCGATGA
TATTAAAATATGGGATGCTCAGGCCTTTCAGGTGGTCAAGCAGTTCAACTATCATAAAGG
AAATGTGAAGGATATAGCATGGAGTAGGGACAACACGATGATGTGCAGTGCTTCTGCTTC
TGGTGACAAGCTCCTGGTAACAGATTGTCAGCTGAACCAACAAACCAAACCAAAGATTGT
GGCCGAACACGCAATAGATGAGAATCAGACCTGTGTACGAGTATCTCACAGTGGGAGAAG
AATGTATTCAGGAGGTATGGGGGGCGATGTTAATGTGTGGGAACGTGAAACAGGACAACT
CAAGAAATCTTACAAGGACACTCACTCAAGCCCTGTAACTTGCATCGCCGTGAATGAGTA
CGAATCCCACGTTGCATCAGGTAGCAACAAGGGTGATATTGTGATCAGGAATCTTGGCTC
AAACGCAACCAGTAAACCGAAGTTAAAAAGTGAGGGACAAGCAGTTCGGTCGATGGCATT
TTCACCTTGGAAGCATTCACTTGTTGGCATGACAATGGATGATGGCAGCATCCATTTATG
GGATACTTTACAATCTGCATTATATCATGAGTTTGTTGAAATACATAACGCACCAGCCAT
GTCATTATCGTTTTCACATTTTAATGATTTGCTCGTCTCTTCTGTTGGACTTGACAAGAA
ACTTATTATATACGACACCAAAAGCAAAAAGTATTTAAACAAAGCAAGTTTGGACCAACC
TCTCACTTCAGTAGCGTTTATGTTAGATGGTGTAACACTCATTGCTGGGTCATCGCTTGG
TCAAATCTACCAACTAGACCTCCGATCAATGAGCAAGCCAGTCAAGGAGGCGCTTGGCCA
CTCCACCTCGGTCCAGAGGGTCGCGGTTCAAAACTCAGTAAAGGTTAAAAAAGAGCGATC
TTCAAGCAAACGAAGAGTTGTGACCGAAAAATCATCGAAAACGGTTTCCTCTGACAGCGA
AAGTAAAATTTGCACCCCTGCACCTACTCCTATCATAGGTTTACATGATCGTCCAAGCCA
GCGCTCTTTACCGCCCTCATCTGGCAAACCAACAACAACGAGTACTCGTCCACAGTTGCC
GAATACTTCTACTTTTTTAACCAATACAGGTTCACCCCCCATAGCAGTATCCACTCCTTT
CCCCAACATATCAACCCCAGCAGCACACACATTAAGACATCATGCTGATGACTATGGGGA
CTTGATATCTCCTGTAAGAGACGATGCTTTTGGTAGGAACGATCACGAAACATCCGCAGG
GCAACAAGGGTCGTTCTCCTTTTCAACAACAACTGGGTCCTTTAACGACGATATAGTTTC
ACCTGTTGCGAACCACACGAAGGCAGTAAAGGGGTTTCAATATCATGGCATTGCCGGTAA
ACAAAGCAACACACGTACGTCGCCCCATCCATTACGACAATCCAGCAACCCCGGTCTTAA
TGGGCACAGTAATAAAGCAGAAAACCAAACCAAGCCAGCAGAGCTTTCCAACCACCAGAG
AATAAAGATGGAAAAGTTAGATGTAACAGATGGTGGATCTGTTTCATTACAGACTACACT
GCATCATTCAATTAATGAAAGTAAAAAGCAAGATCCTGCACCTGATTCATCTCAAGTTAG
GATAGAAGAAACCAAATCCACTGTCGAGGATCATAAAGAGAAAGCTGAGACCTCTAACCA
AGCTGTAGCTAGTTCGAAACCAGATGCAGCTTCCTTTCAATACCAAGCAGAATTTATTCG
GAATATTGTTAAAGATCTAGTAGATGAAATGAGAGATGATGTTCGCTCTCAAGTCAACGA
GCTTTCTACCCAGATGGTGAAACTTTCCATCTTCCAGGAGGATCTCTTCCGGGAGTTACT
TCTCCAGAACAGATGCGGGATCAATGAGCAATTATTGGAAGAGCTGGAGAGAGTGAAACA
GGAGAACGAAAGATTAAAACGGATGCTAAGATGAAACACTTCTCTTGCCTTGGCTGTGAT
GTGGTCTAGTGCCTTTCTTTATACTTTACTTATTAGAGAATAAATTTATTGCGTATAAAA
AA
| SMART |
WD40_repeat (IPR001680) - T[4-36] 45.0 - T[39-79] 0.46 - T[87-125] 2.1 - T[128-168] 0.0039 - T[172-212] 4.0 - T[215-256] 1.3 - T[259-297] 230.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[15-73] 3.2E-10 - T[74-208] 4.5E-18 - T[209-353] 2.8E-14 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[19-319] 1.6E-48 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[32-265] 18.695 |
| Pfam |
WD40_repeat (IPR001680) - T[130-166] 0.04 - T[183-212] 0.15 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[199-213] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NEDD1_HUMAN | 31.034 % | 291 | 6.08E-89 |