Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L155.5.v1.A.nonSL3-1

Possible name(s)

SOX13; SOX5; SOX6

Gene model

KH2012:KH.L155.5

Location

KhL155 [15,023 / 21,691]

Sequences

Amino acid sequence

Length: 372

>KH.L155.5.v1.A.nonSL3-1
LESTMDDDASNKSPSSTREEIHVKYETPTYSGFGGPLYKDGFVTQGRYAAVGMDLAASFP
NLLLPDHQARQRSGESDSGMQIKLESDLSSLISKKEQQLSHMINQLSHLRNQLVRSNEQR
KHSFETAESSFHYYQQSLHKQNKMADLGDSPYTSQTSGSLKKSVKRFKDTKPHNSKNVTQ
QPRSDLSIMTSLPFREAKFSREEGWKNTIASTNNDVTMTSPPVSSKNTKPFQNRLSESSS
RGAVYCEPTRGVKHGKNHIKRPMNAFMVWAKDERRRILQAFPDMHNSNISKILGAKWKEM
SSNEKRPFYDEQTRLNKLHLEKYPDYKYKPRPKRTCIVDGKRLRISEYKALMRHRRNEQK
QQNDGNTPKFAK

Nucleotide sequence

Length: 1,694

>KH2012:KH.L155.5.v1.A.nonSL3-1
ATTGGAATCAACTATGGATGATGACGCAAGCAATAAGTCGCCTTCGTCCACCCGTGAGGA
AATTCATGTTAAATATGAAACACCAACATACAGTGGGTTTGGTGGGCCCTTATATAAGGA
TGGTTTCGTAACACAGGGAAGATACGCTGCTGTTGGCATGGACCTCGCCGCTTCGTTTCC
GAACCTCCTTCTACCCGACCATCAAGCCAGACAAAGATCTGGTGAGTCAGATTCCGGAAT
GCAGATCAAGTTAGAGTCAGACTTATCAAGTTTAATCTCGAAGAAGGAACAACAATTGTC
CCACATGATCAACCAACTAAGTCACCTACGTAATCAACTTGTAAGGAGCAACGAACAGCG
GAAGCATTCGTTTGAAACAGCGGAATCGAGCTTCCATTATTACCAACAATCCCTACATAA
ACAGAACAAAATGGCCGATCTAGGTGATTCCCCATATACGTCACAAACTTCAGGATCGTT
AAAGAAATCAGTCAAGCGTTTCAAAGATACGAAACCACACAACTCAAAGAACGTGACGCA
ACAACCACGAAGCGATTTATCAATCATGACGTCATTGCCTTTTCGCGAAGCGAAATTTTC
AAGAGAGGAAGGTTGGAAGAATACGATCGCGTCGACGAATAATGACGTAACGATGACGTC
ACCTCCAGTATCGTCGAAAAACACAAAACCTTTTCAGAATCGTTTAAGTGAGTCTTCTTC
AAGGGGAGCTGTTTATTGTGAACCGACAAGAGGTGTAAAACACGGTAAGAATCACATCAA
GCGTCCAATGAACGCATTTATGGTTTGGGCCAAGGACGAACGACGGAGGATTCTTCAGGC
GTTTCCAGACATGCATAACTCGAACATAAGCAAGATATTGGGGGCCAAATGGAAGGAGAT
GTCAAGTAATGAGAAACGACCTTTCTACGACGAACAAACCAGATTGAACAAACTGCATTT
AGAGAAATATCCGGATTATAAATATAAACCAAGACCGAAACGAACTTGCATTGTGGACGG
GAAACGACTTCGAATATCCGAGTACAAGGCGCTGATGCGACACCGAAGGAATGAACAGAA
ACAACAAAACGATGGGAACACCCCAAAGTTTGCGAAATAGTGATCTATGCTTGCCTAACC
TGGATTCGAATCCATCACCCTCTAACGCAGGAATAATCGTTTTCTTTCCCGGACTTTGTG
TGAATATATTGATATCTGGTGTATGAAACTTTTATTGTTGTTAAAGAAAGAATGAACTTA
CTTTATCCCTGCATGGCGGGGCAACGACAGTCGTTATAACACGGATGTTCTGTTTCATAC
ACCTCGTGCTCGCTTACAAGTTCCACGTATGTAACTTTGTGGGTGATTGTTTATCTGTAT
GACCAACACTTTATACGACTCCTATTATCAATAACCACTGCCTTAAACCCAATGTTCCTT
GTCTATGTTTTGTTCCTCTTCAGTCACTTTGCATTCGCTGCCATAATCGTGTTCGTTGTA
TTTGCTATGATAACGTCAACGGGGAATCCCCCACTACGTATCAAACTGCCTTTTCTCCTT
GTTTTATCCTTCGGGCTAAAGTGCCAGTCCTCGCATTTAATGCAGTTCTGCGCAGTATAA
GAGGTGTTGGCGGTGTGAACACCAAAGTTGAGCTGTCGCAATTCTGTTGGCTTGATTAAA
ACTGCAAATTGCCA

InterProScan

SUPERFAMILY	HMG_box_dom_sf (IPR036910) - T[249-328] 3.14E-26
Gene3D	HMG_box_dom_sf (IPR036910) - T[255-335] 7.6E-28
SMART	HMG_box_dom (IPR009071) - T[258-328] 1.8E-25
Pfam	HMG_box_dom (IPR009071) - T[259-327] 5.0E-22
ProSiteProfiles	HMG_box_dom (IPR009071) - T[259-327] 20.666

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SOX5_HUMAN	70.635 %	197	8.32E-57
SOX6_HUMAN	68.702 %	198	7.22E-57
SOX13_HUMAN	77.143 %	189	1.09E-54