- Transcript 'KH2012:KH.S1391.2.v1...' >
- Molecular Tool 'Snail-MO (Imai 2009)' >
- Transcript 'KH2012:KH.L154.44.v1...'
Transcript Model
Transcript Id
KH2012:KH.L154.44.v1.A.SL3-1
Possible name(s)
C6; C8B; C9
Gene model
Location
KhL154 [304,253 / 309,068]
Amino acid sequence
Length: 569
>KH.L154.44.v1.A.SL3-1
MRLLFAVIAVLASVLLFCESGEAWWWSRRRAVSCKVSSWGPWAKCSKTCGGGKAIRSRYI
KRNSAHGGTRCPTLHQTRPCYTQRCPWPITCKWSAWTAWSSCDPCFPGARSKFRTITTPA
MFNGAECTGSRALTDFSCTIKKACITKTCPATKFSCLDGLGCISKKLRCNGDNDCADRSD
EKSCSKGTIHLPCGNKKYKGIPNIDIAGAGFDLIKGVAEGKILDNQKYDGRCSTVKSGDI
GERFRKPANVQFYRFQARTHSSFYVKSYQSAKAYMKDLRASTARKLSAGVSYTDPSLVSV
SMKVGNSNSRKSRLAVTFGTNFDSKFFTVYSTVQVAQFRMVRHNLLLSYEFRRRLKQLPD
DFDYTKYAQIISDFGTHFYSWGVLGGRYEYVYRYSKRDLRRSRLTDHQQKSCLSTEAGIS
FLGSGGSIGSSNCKTNGLSKKHGGSFTRSATNAISNVIGGKSDKAASLSFFSGKTPNKSN
YNEWVKTVKHHPAIIDYKLSPISSAVPLSMLAIRKNLERALVLYLKEYDYSKCKGKCAHG
ATVVVKDKGKLCQCLCPANYGGIDCHVRA
Nucleotide sequence
Length: 1,850
>KH2012:KH.L154.44.v1.A.SL3-1
GCATGCGATTGTTGTTTGCAGTGATTGCTGTTTTAGCATCAGTATTGCTGTTCTGTGAGA
GTGGAGAAGCATGGTGGTGGAGTAGAAGAAGGGCTGTATCTTGCAAAGTATCTAGTTGGG
GTCCTTGGGCTAAATGTTCCAAGACATGTGGTGGGGGGAAAGCAATTAGATCAAGGTACA
TTAAACGAAACTCAGCTCATGGTGGCACTAGGTGTCCTACTCTACATCAAACAAGACCTT
GCTATACTCAAAGGTGTCCATGGCCCATTACATGTAAATGGAGTGCATGGACTGCATGGT
CAAGCTGTGATCCTTGTTTTCCAGGAGCAAGGAGCAAATTCCGAACTATTACAACACCAG
CAATGTTCAATGGGGCAGAGTGTACTGGATCTAGAGCTCTTACAGATTTTTCCTGTACAA
TAAAAAAGGCTTGCATAACAAAAACTTGTCCAGCTACCAAGTTTTCTTGCCTTGATGGTC
TTGGTTGTATTTCTAAAAAACTTCGCTGCAATGGTGACAATGACTGCGCTGACCGCTCCG
ATGAAAAAAGCTGTTCTAAGGGCACCATTCATTTACCTTGTGGAAACAAAAAATACAAAG
GCATTCCAAACATTGATATCGCTGGAGCTGGGTTCGACCTCATAAAAGGGGTAGCAGAAG
GCAAAATCTTGGATAATCAAAAATATGATGGACGATGCTCAACCGTGAAAAGTGGTGACA
TAGGAGAACGCTTTAGAAAACCAGCAAATGTTCAATTTTATCGGTTTCAGGCACGAACAC
ATTCATCCTTTTACGTAAAGTCCTATCAATCAGCAAAGGCCTACATGAAAGATTTACGAG
CATCCACTGCACGTAAACTTAGCGCTGGTGTCTCATACACAGATCCATCTCTAGTTAGTG
TATCCATGAAGGTTGGTAACTCCAACAGTCGCAAGTCAAGATTAGCGGTTACTTTTGGAA
CAAACTTTGATTCCAAGTTTTTTACAGTATATAGCACTGTACAAGTTGCACAATTTAGAA
TGGTTCGTCATAATCTTCTCCTTTCATACGAGTTCCGACGACGATTGAAGCAACTGCCAG
ATGATTTTGATTACACGAAATATGCTCAAATAATTTCTGACTTTGGCACCCATTTCTACT
CATGGGGCGTTCTGGGTGGTAGGTATGAGTATGTGTACCGGTATTCCAAGAGAGATCTAC
GTAGGTCAAGACTCACAGACCATCAGCAAAAATCTTGTTTGTCAACTGAAGCTGGCATAT
CTTTTCTCGGCTCTGGCGGCAGTATTGGTTCATCCAACTGTAAAACAAATGGGCTGTCAA
AAAAACATGGAGGAAGTTTCACTCGATCTGCTACCAATGCTATTTCTAATGTGATTGGTG
GTAAATCCGACAAAGCGGCTTCTCTAAGTTTTTTTTCTGGAAAAACACCGAACAAGTCAA
ATTATAATGAATGGGTTAAGACAGTTAAACACCATCCTGCAATAATTGATTATAAGCTCT
CTCCAATATCATCAGCTGTACCACTTTCAATGTTGGCGATTAGAAAAAACTTAGAACGTG
CTTTGGTTCTCTATTTGAAGGAGTATGACTACTCCAAGTGTAAGGGTAAATGTGCCCATG
GTGCAACAGTGGTCGTGAAGGATAAAGGAAAGCTCTGCCAGTGTCTTTGCCCTGCCAACT
ATGGTGGCATTGATTGCCATGTTCGTGCATAAAGCAATGTTTTTATTGTTATATTTTTGT
TCATTAAGTGGTGAAAGAAAAAAATGCATTAATCAGAAAGTATTTATTGCAATCATTTGC
TTCGGGATTATAACATTAACAAGAAATAAATATACCAACAAAATAATATA
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[32-82] 2.75E-11 - T[90-130] 3.01E-6 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[32-80] 9.1E-14 - T[90-138] 3.5E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[33-86] 12.395 - T[90-150] 9.389 |
| SMART |
TSP1_rpt (IPR000884) - T[36-86] 1.2E-13 - T[93-150] 2.2E-6 |
| Pfam |
TSP1_rpt (IPR000884) - T[37-85] 1.1E-10 - T[94-144] 0.0045 |
| PRINTS |
MAC_perforin (IPR001862) - T[111-127] 6.0E-22 - T[155-175] 6.0E-22 - T[356-378] 6.0E-22 - T[483-502] 6.0E-22 - T[534-554] 6.0E-22 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[143-184] 1.57E-9 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[147-184] 1.4E-11 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[148-186] 1.4E-12 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[148-185] 12.413 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[149-184] 2.829E-10 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[162-184] . |
| ProSiteProfiles |
MACPF (IPR020864) - T[189-532] 30.482 |
| Pfam |
MACPF (IPR020864) - T[323-524] 3.4E-37 |
| SMART |
MACPF (IPR020864) - T[325-526] 3.2E-31 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[367-378] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[554-565] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 31.876 % | 268 | 1.82E-79 |
| CO8B_HUMAN | 27.846 % | 212 | 2.67E-61 |
| CO9_HUMAN | 26.99 % | 199 | 1.33E-56 |