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TRANSCRIPT CARD

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  1. Clone 'cien157481' > 
  2. Clone 'ciad052n08' > 
  3. Transcript 'KH2012:KH.L154.17.v1...'

Transcript Model

Transcript Id

KH2012:KH.L154.17.v1.A.ND1-1

Possible name(s)

ACTB; ACTC1; ACTG1

Gene model

KH2012:KH.L154.17

Location

KhL154 [191,204 / 193,026]

Sequences

Amino acid sequence

Length: 377

>KH.L154.17.v1.A.ND1-1
YDFNMVDAEGAALVFDNGSDTLKAGFASDEAPRTFFPTIVGRPRQRGIFAENKELFVGDE
AQNHRRVLNIKHPIERGIITHWDDMEKIWHHTFYNELSVDPEKHPVLLTESALNPESNRE
TMVSYMFEKFNTPAMYVAVQSMLSLTASGRSTGTIVESGHGTSLAVPIYEGRVVKSAVLS
LDVAGRNITSYLRKLLLEKGYSFNNIKAPRVTLRDIKEKLCNVALDFDQELDANTVEQSY
ELPDGEIINVGKEGFRSTELLFQPSMIGMQSDGIHQMTNNSILKCDAETQQKYMYGNIVL
AGGSSMFTGFAERMYKEITALAPSTCKVKIIAPPERKYSAWIGGSILASLSTFRDTCISK
QEYEEFGTSIVQRKCLV

Nucleotide sequence

Length: 1,292

>KH2012:KH.L154.17.v1.A.ND1-1
TAAATCTTTAGTTTGATTTTCTGCTAATACGATTTCAACATGGTTGATGCTGAAGGTGCG
GCTCTCGTATTCGACAATGGATCCGATACGTTAAAAGCTGGTTTCGCATCCGACGAGGCA
CCCCGTACCTTCTTCCCAACCATCGTAGGCCGTCCTCGACAACGTGGTATTTTTGCGGAA
AATAAAGAACTGTTTGTTGGAGATGAAGCTCAGAATCATAGACGGGTCCTTAACATTAAG
CATCCAATTGAACGTGGTATCATCACCCACTGGGACGACATGGAAAAGATCTGGCATCAC
ACTTTCTACAACGAGCTTAGCGTAGACCCAGAAAAGCACCCAGTTCTTCTCACTGAATCA
GCACTTAACCCTGAAAGTAACCGAGAAACAATGGTTTCGTACATGTTCGAAAAATTCAAC
ACCCCCGCTATGTACGTCGCCGTCCAGTCCATGCTTTCATTGACTGCATCAGGTCGTAGC
ACTGGTACCATCGTGGAAAGTGGACACGGTACTTCACTTGCAGTTCCAATCTACGAAGGC
CGTGTCGTTAAATCAGCTGTTCTTTCGTTGGACGTGGCGGGAAGAAATATTACCAGTTAC
TTAAGAAAACTCTTGCTGGAAAAAGGTTATTCCTTTAATAACATCAAGGCACCCCGTGTA
ACCCTCCGTGACATCAAGGAAAAATTGTGTAATGTTGCTCTTGACTTCGACCAAGAATTG
GATGCCAACACGGTTGAGCAAAGTTACGAGCTTCCTGACGGAGAGATCATCAATGTAGGA
AAGGAGGGTTTCAGGAGCACAGAGTTACTCTTTCAACCATCCATGATTGGTATGCAATCT
GATGGAATTCACCAAATGACAAATAACTCAATCTTGAAGTGCGATGCTGAAACACAGCAA
AAGTATATGTACGGCAATATCGTTCTTGCTGGAGGATCTTCCATGTTTACCGGTTTTGCT
GAGAGAATGTACAAGGAAATCACTGCTCTTGCACCATCAACCTGTAAGGTGAAGATCATT
GCCCCACCAGAGAGGAAATACTCCGCGTGGATTGGAGGATCCATCCTTGCTTCACTCTCC
ACCTTTAGAGATACATGTATCAGCAAACAAGAGTACGAAGAGTTCGGTACCTCCATTGTC
CAACGAAAATGCCTTGTTTAAAAAGGCAATAACATTATTAGCTTGATCCTGCATGCTTTT
ACTCAGTGTATACTGTTTCGTCATTCGTCTTATAATTAATACTCGGATAACTCATACTTG
AGAATGTATATCAATACATCATTATATACACT

InterProScan

PANTHER
Actin (IPR004000) - T[6-375] 1.7E-163
Pfam
Actin (IPR004000) - T[10-375] 5.8E-123
SMART
Actin (IPR004000) - T[10-376] 2.2E-174
PRINTS
Actin (IPR004000) - T[31-40] 3.7E-35 - T[52-63] 3.7E-35 - T[87-105] 3.7E-35 - T[118-131] 3.7E-35 - T[143-162] 3.7E-35 - T[236-252] 3.7E-35

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ACTG_HUMAN 62.069 % 488 8.63E-174
ACTB_HUMAN 62.069 % 488 7.99E-174
ACTC_HUMAN 61.702 % 481 6.48E-171