- Molecular Tool 'FOG>ephrin-Ad' >
- Transcript 'Moocci.CG.ELv1_2.S26...' >
- Transcript 'KH2012:KH.C7.568.v2....' >
- Molecular Tool 'bFGF' >
- Transcript 'KH2012:KH.L152.2.v1....'
Transcript Model
Transcript Id
KH2012:KH.L152.2.v1.A.nonSL3-1
Possible name(s)
ISL1; ISL2; LHX9
Gene model
Location
KhL152 [106,293 / 116,974]
Amino acid sequence
Length: 458
>KH.L152.2.v1.A.nonSL3-1
RERVRTIYCDVIIASNIGVEGEYPALQAENFEISNLDPGYSPPLADDSRSGSFTSFMNES
FAIFGQDEKLGAKMADPHGGCVSASLNCDPCRIPLCVGCGSPIHDQYILRVAPNLEWHAG
CLKCADCGQYLDETCTCFVRDGKTYCKRDYTRLFGTKCNKCGLCFSKNDFVMRARDKIYH
IQCFKCVACSRQLIPGDEFALRDDGLFCKADHEVATSGDMMVHDGHMIPGIPQTPNPQGV
ISPQMGGERVISHRSGGHSGGQRRSKDAKTTRVRTVLNEKQLHTLRTCYAANCRPDALMK
EQLTEMTGLSSRVIRVWFQNKRCKDKKRSIALKQIQEQQAKQQHNNEQGNNVQGLSGMNG
VPMVASEPVRNDNSVSVAPVEVRNYQQPAWKALSDFALQSEIEQPAFQQLMNNFSDQGQG
SISDSSEISSIPSVSSASMDSTTCSTPHTVESTVPACS
Nucleotide sequence
Length: 1,838
>KH2012:KH.L152.2.v1.A.nonSL3-1
GAGTATTACAACTTGTGTCTGTGACGTGAGCGAGTGAGGACAATTTACTGTGACGTCATA
ATAGCCAGCAATATAGGGGTGGAAGGTGAATACCCCGCTCTACAAGCGGAGAATTTCGAA
ATTTCAAACCTGGATCCCGGATACTCGCCGCCGTTGGCGGACGACTCAAGGTCGGGGTCG
TTCACAAGTTTTATGAACGAATCATTCGCCATTTTCGGTCAGGACGAGAAACTGGGAGCA
AAGATGGCGGACCCTCATGGAGGCTGCGTGTCGGCCTCGCTTAATTGCGACCCCTGCCGC
ATCCCTCTATGCGTAGGATGTGGCTCCCCTATACACGACCAATACATACTACGTGTCGCT
CCCAACCTTGAGTGGCATGCTGGTTGCTTAAAATGCGCTGATTGTGGTCAATACTTGGAC
GAGACGTGCACGTGTTTTGTAAGGGATGGGAAAACGTATTGTAAACGGGATTACACAAGG
TTATTCGGAACAAAATGCAACAAGTGTGGTCTCTGCTTCAGTAAGAACGACTTTGTAATG
CGAGCCAGAGACAAGATATATCACATACAATGTTTTAAGTGTGTGGCTTGTAGCAGGCAG
TTAATACCAGGGGACGAATTCGCTCTAAGAGACGACGGTTTGTTCTGCAAAGCTGACCAT
GAAGTTGCAACATCCGGGGACATGATGGTTCACGACGGCCACATGATTCCGGGAATTCCC
CAAACCCCGAACCCTCAAGGGGTCATCAGCCCTCAAATGGGGGGCGAGAGGGTGATCAGC
CATCGGTCGGGTGGGCACAGTGGGGGGCAAAGGCGAAGCAAAGATGCGAAGACGACGCGA
GTTAGGACAGTGCTCAACGAGAAACAACTCCACACGCTTAGAACTTGTTACGCGGCCAAC
TGTCGACCTGACGCTCTAATGAAAGAACAACTCACAGAAATGACTGGACTATCTTCGCGT
GTAATAAGGGTTTGGTTCCAAAACAAAAGATGCAAAGACAAGAAACGTTCCATAGCTTTG
AAACAAATCCAGGAGCAGCAAGCGAAGCAACAGCATAATAACGAACAGGGTAATAACGTC
CAGGGTTTATCAGGGATGAACGGAGTCCCCATGGTTGCATCAGAACCTGTAAGAAACGAC
AACTCAGTTAGTGTAGCTCCTGTTGAAGTGAGGAACTACCAGCAACCAGCTTGGAAAGCA
CTCAGCGACTTTGCTCTTCAAAGCGAAATAGAACAACCGGCCTTCCAACAACTGATGAAC
AACTTTTCCGATCAAGGTCAAGGCTCGATATCCGATTCGTCCGAAATCAGTAGCATTCCT
TCAGTTTCCTCAGCCAGCATGGATTCGACCACATGTTCCACCCCGCACACAGTCGAATCA
ACTGTACCGGCGTGTAGCTAACACGACAAACAATTACAAACATTCATCATACGTTTGTGT
AGATTCGTAGTTTTTGTTAGACCCGCAATATTGTCCCATCTGCAAAATGCAACCAAAGAA
GAAAATATTCTTCTGGCAACTAACTTATATAAGCTGCTTAAAACTTAAGCGGCAAATTGT
TTCCTTCCCGGATCTTACACACAAGCCATAGGCAGTGTTGCCGAGTATTTAACGCAGTGT
TGCCGATTGTTCCAATTTTTGTGTTCCCAAGTAATATAAACCACGTCATTATGACGTCAC
AAAAATGACGTAGTTCCACGTCACAATCAAACCAACAAGCACAATCAACAAAAGACAAAT
CTCGTTATTTTTAGATACGGTGCGTAGTATGCATGTCGTCTTATATTTTGTCTCATTGTG
GTCGCAATTTACAAAATAAAATCAAAAATAAAGAAAAA
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[94-156] 14.603 - T[157-218] 10.86 |
| SMART |
Znf_LIM (IPR001781) - T[95-149] 8.2E-14 - T[157-211] 1.8E-12 |
| Pfam |
Znf_LIM (IPR001781) - T[96-153] 1.2E-13 - T[158-213] 1.8E-12 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[158-193] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[254-328] 6.84E-17 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[268-328] 15.337 |
| SMART |
Homeobox_dom (IPR001356) - T[270-332] 1.6E-17 |
| Pfam |
Homeobox_dom (IPR001356) - T[272-327] 1.0E-14 |
| CDD |
Homeobox_dom (IPR001356) - T[272-329] 1.2639E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ISL1_HUMAN | 63.636 % | 434 | 1.58E-151 |
| ISL2_HUMAN | 57.182 % | 398 | 4.33E-137 |
| LHX9_HUMAN | 35.878 % | 169 | 5.21E-48 |