- Transcript 'KH2012:KH.C12.441.v1...' >
- Clone 'AHC0AAA194YH09' >
- Transcript 'Cisavi.CG.ENS81.R27....' >
- Transcript 'KH2012:KH.L144.2.v4....'
Transcript Model
Transcript Id
KH2012:KH.L144.2.v4.A.SL1-1
Possible name(s)
CHD4; PHF21A; PHF21B
Gene model
Location
KhL144 [105,326 / 114,080]
Amino acid sequence
Length: 642
>KH.L144.2.v4.A.SL1-1
DEILRKELRDIQKHISELGAVQKQLSKAKSNEKKKVKDENNTTNIESKDHTIVNGSSFIK
IGSQDKTTSVGQLVQISSINYQQDIVSQPNQTSTTGVSILCNGGAKSPPTKINFMKPHET
KELTKVLISNGVIKPNTHTVLEITQQTNNPVLTNGKSPDHYQPLNLTKSGSNSNNKLLKT
LNNGNSVLLPLAPLGDLGALSPTNSANHPVKFRVPVTGKSGGRSIVLLSTAKIHNDKPTF
RLVSPRALRPNLASTPNITETFVQKQNHPKTNQTQVWLNMAATKEPSCFVPIGNESKLTN
SEVDLQNIKSLEKLSQKIVMTPKQTNYIASTSPDHLAPSPEIDASLDQDDEKPSLPKSAR
NYAAVSTSQLNKHDFLSQLHLVPKERAERLRNRRYGRRKVAANPVYSGGIYVSTSAAESA
KRLLPPELLGLEDTVPAKRSRGRPRNSTKRSDITEEVSHIIEQAKPLKMKTPLQDSSVIK
TRVKRRSDSDPHNSGPCGVCQKSNGGLISCDTCGCSYHLHCTKPVMDQAPTNMWFCVRCK
HKFSDPSTASTWPGLQSIVHSYFTFEAERNAALQRARKRRDVLIDAEKKLNDQVKALVST
IMNKVTKKYKVHDSVQNATDSYQRLLRGVETLKHLSEFAVTN
Nucleotide sequence
Length: 2,860
>KH2012:KH.L144.2.v4.A.SL1-1
GATGAAATACTAAGAAAAGAGCTTCGAGACATACAAAAACATATATCTGAGTTGGGTGCG
GTTCAAAAGCAATTAAGCAAAGCTAAGTCAAACGAAAAGAAAAAAGTTAAAGATGAAAAT
AACACAACGAATATAGAATCAAAAGATCACACGATTGTAAATGGAAGTTCATTCATAAAA
ATAGGATCTCAAGACAAAACTACGTCCGTTGGACAACTGGTGCAAATTTCATCCATTAAT
TACCAACAAGACATAGTTTCTCAACCAAACCAAACCAGCACGACTGGTGTTTCAATACTC
TGCAATGGTGGTGCAAAGTCCCCACCCACAAAAATAAACTTTATGAAACCACATGAAACA
AAAGAGTTAACAAAAGTGTTGATCAGTAACGGAGTTATAAAACCAAACACTCATACAGTT
CTAGAAATCACACAACAAACAAATAACCCAGTTCTCACAAATGGGAAATCACCTGACCAT
TACCAGCCTCTTAACTTAACGAAATCAGGTTCAAATTCGAACAACAAACTTTTAAAAACT
CTCAACAATGGGAATTCCGTTCTTCTTCCTCTTGCGCCACTAGGTGACCTCGGAGCGCTG
TCCCCGACGAACTCAGCCAATCATCCAGTTAAGTTTAGGGTTCCAGTTACAGGGAAATCA
GGCGGTCGTTCAATTGTTTTGCTTTCCACTGCAAAAATACATAACGACAAACCGACATTT
AGGCTTGTATCTCCCCGTGCATTGCGACCAAACCTTGCCTCTACTCCAAATATTACGGAA
ACTTTTGTGCAGAAACAAAACCATCCGAAAACAAACCAAACACAAGTATGGTTGAACATG
GCAGCCACAAAAGAGCCGTCTTGTTTCGTCCCAATTGGCAACGAATCAAAACTAACAAAC
AGTGAAGTTGATCTACAGAATATCAAGTCATTGGAAAAACTGTCGCAGAAAATTGTGATG
ACTCCGAAACAAACTAATTACATTGCTTCCACATCCCCGGACCATCTTGCCCCGTCTCCA
GAAATCGATGCTTCCTTGGATCAAGATGACGAGAAACCATCGTTGCCGAAAAGCGCGAGA
AACTACGCAGCTGTGAGCACCTCACAACTTAATAAACACGACTTCTTGTCCCAGTTGCAC
CTCGTGCCCAAGGAGCGCGCAGAGCGGCTCCGAAACCGCCGATATGGCCGTCGAAAAGTA
GCAGCGAATCCTGTATACAGTGGAGGTATCTATGTCTCCACTTCTGCTGCTGAATCTGCC
AAAAGGTTGCTTCCACCTGAGTTGCTGGGATTGGAGGATACAGTGCCCGCTAAACGATCA
AGAGGTCGTCCACGTAATTCCACCAAGCGTTCTGACATCACAGAAGAAGTGTCACACATT
ATTGAACAAGCAAAACCTTTGAAAATGAAAACACCGTTGCAGGATTCGAGTGTCATTAAA
ACTCGTGTGAAACGAAGAAGTGATTCGGATCCCCACAATAGTGGTCCATGCGGTGTATGC
CAGAAGTCAAACGGTGGCCTTATATCATGTGATACATGCGGATGTTCATACCACTTACAT
TGCACTAAACCAGTGATGGACCAAGCGCCAACTAATATGTGGTTCTGTGTTAGATGCAAA
CACAAGTTTTCCGACCCCTCTACCGCATCCACGTGGCCAGGACTTCAATCCATCGTTCAT
TCATATTTTACTTTCGAGGCCGAGCGCAACGCAGCGTTGCAACGCGCACGTAAACGACGC
GATGTATTAATCGACGCTGAGAAAAAACTAAACGACCAAGTTAAGGCACTTGTGTCAACT
ATAATGAATAAAGTTACTAAAAAGTACAAAGTCCACGACTCGGTACAAAACGCTACGGAT
TCTTATCAGAGGTTACTACGTGGGGTTGAGACGCTTAAACATCTCTCTGAATTCGCTGTG
ACGAACTGAAGGTGCTTAGGACATCAAATTTCTGCGAAATGGTCAAAAATCACTGTAAAT
CGTGTGTAATCACTTCCGTATTGCTGTTCATGTTGTTCACGCCTTGGTACGTCCGCACAA
CCCACACGTTTTAAAGCACAATCATTACTGTTATAGTAGGGTGGGGTAAATCGAGACATG
TTTATTCTCTTTTTACGTCACATGGTAGTAAACAAAAAATTATTTACAGAATTACGTTAC
TGTAGCCCCACGACCCTAAATGGTCGTTGTTAAATGTTCAAAACATGATCAGGAAACAAG
GGATTTAGGTATTACCGGTATTCCATCTTACCACACAGTACTATATACGTTTGTCGCAGC
GACCGCTTAAAAATAATAATTCTTTCCAATATGATAAAGTATTTATGATTTTTGTCACGA
CACATTTGGCAAAATAAAAAGTCCCATATTTTACAATTGTACAAAACACATGTTAAAACG
TTCCCAAACTTTCTATAAATGGGCAATTATTCTAACTTTTCCATATATTGTTGACTAGTT
TTTCCGCTTACAAGTGAAGTACAACAGCACAGTAGTGTACTTCCGCATTTAACTTGGGAA
AATTTGCCATTTTAAACCCATAAACTCTTGGTCAAGCTATTCTGTTTCACACTTTTGCAC
TTTTATGTTTTCTGAGCACACGCATGCGAAAGAAATATTACAATAGTTTATCTCGTAAAA
ATGAATTCATTTTAAAAAGTCAAAACAATTAAGTTTTTTTGTTCTTTATGAATATAAAGT
ACACCATAGGCGAAAAAATTGTGAATTTTGGGGCTTTTTCTTTATCCAGACTGTGGAAAT
ACTTTATTTTTTTCACGCTCGCAGTATTTTCGTTGCTTTTCCTTTTTTATCCGCACACCT
TCAAGTTTTCGTTCTTCCAATAAAATAATTTCCAATTCAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[462-546] 9.5E-13 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[487-545] 4.87E-12 |
| ProSiteProfiles |
Znf_PHD-finger (IPR019787) - T[494-542] 9.526 |
| SMART |
Znf_PHD (IPR001965) - T[496-540] 7.8E-10 |
| ProSitePatterns |
Zinc_finger_PHD-type_CS (IPR019786) - T[497-539] . |
| Pfam |
Znf_PHD-finger (IPR019787) - T[497-541] 1.4E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PF21A_HUMAN | 28.014 % | 106 | 5.25E-24 |