- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.L141.56.v1...'
Transcript Model
Transcript Id
KH2012:KH.L141.56.v1.A.ND1-1
Possible name(s)
CDC40; WDR25; WDR5
Gene model
Location
KhL141 [536,210 / 543,045]
Amino acid sequence
Length: 534
>KH.L141.56.v1.A.ND1-1
KDVHSVNVIDHVENKMVMFNPTYEEMHAPEQGPANPFKTKQQLAQKNTLAGFVQEAHFNH
FTFENQRRTFHSYGYAVDPSNDETEAGDKIVVSNVDFDHDPDEDKPPKEPKQVDPSDAKT
VFEKIKARPEDKRKRIRQNDAADIEGFLGPWGGFVDEQKIAKPDEETQKELDEMTAKRQK
KGKPAEEKFVEEKTTLHVQDPHDYQGRSYLHIPQDVGVNLKSSMPPDKCYLPKRLIHTWS
GHTKAVSSIKLFPKSGHLLLSSSMDCKVKLWEVYNKRRLLRTFSGHGKAVRESSFNNDGS
KFLSAAYDRYIKLWDTETGQCISRFSNKKIPYCVKFNPDENKQHLFVAGLSDKKIVTWDS
RSKDIVQEYDRHLGAVNTITFVDNNTKFVSTSDDKSLRVWEWDIPVDFKYIADPTMHSMP
SVTLSPNEKWLGCQSLDNQIMIFDVQGRFRLKRKKIFKGHMVAGYACQMTFSPDMSYVAS
GDGDGKVFIWDWKTTRMYSKFQAHESVCIGCVWHPHETSKLITCGWDSQIKLWD
Nucleotide sequence
Length: 2,290
>KH2012:KH.L141.56.v1.A.ND1-1
AAAGATGTTCATTCTGTAAACGTAATTGACCATGTTGAAAACAAGATGGTGATGTTTAAC
CCAACATATGAAGAGATGCACGCCCCTGAACAGGGACCTGCTAATCCATTCAAAACAAAA
CAACAGTTGGCGCAGAAAAATACGCTTGCAGGGTTTGTACAAGAAGCGCATTTCAACCAC
TTCACATTTGAAAATCAACGAAGAACTTTCCACAGCTATGGTTATGCTGTAGATCCATCA
AATGATGAAACGGAGGCTGGAGACAAAATTGTCGTTTCGAATGTTGATTTTGACCATGAC
CCTGACGAGGACAAACCACCCAAGGAACCCAAACAAGTTGATCCTTCTGATGCAAAAACT
GTGTTTGAGAAGATCAAGGCTCGTCCTGAAGATAAAAGGAAACGGATTCGACAGAATGAC
GCTGCGGATATCGAAGGTTTCCTCGGACCATGGGGGGGTTTCGTTGATGAACAGAAAATA
GCTAAACCGGATGAGGAAACACAGAAAGAACTTGATGAGATGACAGCCAAGCGACAAAAG
AAAGGAAAACCAGCTGAAGAAAAGTTTGTTGAAGAGAAAACGACGTTACACGTTCAAGAT
CCCCACGATTATCAAGGTCGTTCATATCTTCATATTCCACAAGATGTTGGCGTCAACCTT
AAATCAAGTATGCCTCCCGATAAATGCTATCTACCCAAGCGACTTATTCATACATGGAGT
GGTCACACGAAGGCAGTATCGAGCATTAAACTTTTTCCGAAGTCAGGTCACCTATTGCTT
TCCTCTTCGATGGATTGTAAAGTCAAATTATGGGAAGTTTACAACAAACGTCGATTGTTA
CGAACGTTTAGTGGGCACGGAAAAGCTGTTCGAGAATCAAGTTTCAACAATGATGGGTCA
AAGTTTTTATCAGCTGCGTACGACAGATATATTAAACTATGGGACACTGAGACCGGCCAA
TGTATATCACGTTTTTCAAACAAGAAAATTCCATATTGTGTAAAATTCAATCCAGATGAA
AATAAACAACATCTATTTGTAGCGGGATTGTCAGACAAAAAGATTGTGACGTGGGATTCC
CGGTCCAAAGATATTGTACAAGAATACGACAGACACTTGGGTGCAGTGAACACGATAACA
TTTGTCGACAATAATACAAAGTTTGTTTCAACTTCTGATGACAAGAGTCTCAGGGTTTGG
GAATGGGACATACCAGTTGATTTTAAATACATCGCTGATCCCACCATGCACTCCATGCCA
TCGGTCACCCTCTCACCTAATGAGAAATGGCTTGGTTGTCAATCTCTGGACAACCAGATC
ATGATATTCGACGTTCAAGGAAGGTTTCGACTCAAAAGAAAGAAAATTTTCAAAGGGCAT
ATGGTTGCAGGTTACGCTTGCCAAATGACATTTTCTCCCGATATGTCATATGTTGCCTCT
GGAGATGGAGATGGTAAAGTTTTTATTTGGGATTGGAAAACTACTCGAATGTACAGCAAG
TTTCAAGCTCACGAGAGTGTTTGTATTGGTTGTGTTTGGCATCCACATGAAACCTCTAAA
CTGATAACTTGTGGCTGGGATAGTCAGATCAAACTGTGGGATTGAGGGCAACATGATAAC
AGTAATATATTCATGCGAGTGTTCAGCGGCGTATTTCTCTTTTGCTTCAGCGGAAGGCCC
TTTACCGGCAACATATTCGACTCTTCTGCCCAGACATTGTACCTGCAAAAAAATTCAAGT
AAACATTTGTTGTTTGCCAACAATGTTCATTTATTACATGATGCGTGAAATATTTAGCAT
AGCAGCTCATTGTGATTTCTATTGCATTTCGGAAAAATATAGAACTTCAATTTTAGTTTT
ACTAGATGTATTCACCGACACGGTAGGCACTTTAGATGCTCCGTAATTGAATATATTTGC
AAAAATGTGCGAAATGTATTTGTTCTGTAACATAAATAATTCATAATGTCCGGTGCCGTG
GCAAAGTAGTTAGCGCGCTACCCACCAATCCAGAGGTAATGGGTTCAAGGCTCGGCGCTG
CTGCCGTTGTGGGCGTATGTGTCCTTGGGCAAGACACGCAATTGATTCAACCCAGGGGTC
ACTAATAGGCTGTCCAAATTATCAGCCATACATAAAAATCCCCTTAAATCAATTACCCAC
AAAGTTACATACGTGGTAACTTGTAAGCTGGTACGATAGGTGTATGAAACAGAACACCCG
TGTTATAACGATTCTCGATTTCCGGCCACTTGAGGATAAAGTAAGTTACATTTATTCATT
CATAAATTGT
| PANTHER |
PRPF17 (IPR032847) - T[3-534] 1.4E-258 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[218-534] 2.8E-94 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[230-534] 2.5E-68 |
| SMART |
WD40_repeat (IPR001680) - T[232-272] 7.0E-8 - T[276-315] 5.2E-7 - T[318-359] 0.057 - T[362-401] 2.5E-5 - T[407-444] 58.0 - T[450-491] 7.7E-5 - T[494-534] 5.0E-6 |
| Pfam |
WD40_repeat (IPR001680) - T[234-271] 4.3E-6 - T[278-315] 7.3E-5 - T[366-400] 0.014 - T[455-491] 2.6E-4 - T[500-534] 0.01 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[239-281] 12.079 - T[283-324] 14.886 - T[369-401] 11.879 - T[469-500] 10.341 - T[501-534] 10.709 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[239-534] 42.659 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[259-273] 4.9E-5 - T[302-316] 4.9E-5 - T[521-534] 4.9E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[259-273] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 30.592 % | 136 | 7.28E-36 |
| WDR25_HUMAN | 28.981 % | 152 | 3.65E-40 |
| PRP17_HUMAN | 68.654 % | 757 | 0 |