- Transcript 'KH2012:KH.S460.4.v1....' >
- Transcript 'Moocul.CG.ELv1_2.S34...' >
- Transcript 'KH2012:KH.L122.5.v1....' >
- Clone 'ciht018d21' >
- Transcript 'KH2012:KH.L122.5.v1....'
Transcript Model
Transcript Id
KH2012:KH.L122.5.v1.A.SL3-1
Possible name(s)
PARN; PNLDC1
Gene model
Location
KhL122 [28,982 / 33,117]
Amino acid sequence
Length: 627
>KH.L122.5.v1.A.SL3-1
SKAIDESSFICIDGEFTGLTNHRYNLTSYDSPEERYLKLHSNTENFMLLQFGMCTFSWKE
DEQKYQVDAFNFYIFPFRSSFPGVPDRIFSCQASSLDFLTLQDFDFNKAIKEGIPFLRPS
EEASVRSAIEEKQAYRQSTYKSPAKFDGVGRSPSSKGPSTPITDQKTKDFTEKVVAKIKN
FLENTEDSEIVLEPCNSYLRKILFENIPAAFPGKILVESRTDEQTHQRHIVVVRGASASL
QKERNLQAKVKEESNLEEAVGFSKIVKKLSQSQKLIVGHNMLLDVFYTIQQFVCPLPDVL
EEFKSLVGCVFPKLLDTKLMGSMLPFRDLLSTTALGDMNARLREPPFQPPDITVPGKYNV
GSTKSQDSNLHEAAYDAYVTGSAFLSMVNYLKSFQTNKKILTSFSSLCSLISPYVNKVFL
MRSFDIPYLNLSGPDLSPCRDHVFHLEFPALWKSNDLRQLFSPVGQIHISWINETQCWIG
LHNKTQTKNVKSLVSGNSNDSFRLRTYKEYQSDSTSALPTATNGRQSSPFRPSSATKSFI
SIVEAAQITDTPTTTSSAQRKRPQSEVTSPFDTSHASRSPDEPELKKQKSIEDCATTTTN
KQEETEVKQTTTKVKNSTSTFHVPDEW
Nucleotide sequence
Length: 2,117
>KH2012:KH.L122.5.v1.A.SL3-1
TCAGCAAAGCGATTGACGAATCAAGTTTTATCTGCATTGATGGGGAATTCACCGGTTTAA
CGAACCATCGGTATAATTTAACGTCCTATGATTCGCCAGAGGAACGTTATTTGAAATTGC
ATTCAAACACAGAAAATTTTATGCTGCTGCAGTTTGGAATGTGCACTTTTTCATGGAAGG
AAGACGAACAAAAATATCAAGTTGATGCGTTTAACTTTTACATCTTCCCGTTCCGTTCCT
CGTTTCCTGGAGTTCCTGATCGGATATTTTCATGCCAAGCTTCAAGTCTTGATTTCTTGA
CTTTACAAGACTTTGATTTCAACAAAGCAATAAAAGAAGGGATCCCATTTCTTCGACCAA
GTGAAGAAGCTTCTGTTAGATCTGCGATTGAAGAAAAACAAGCTTATCGTCAATCTACTT
ACAAATCACCAGCCAAGTTTGACGGCGTTGGTCGTAGCCCTTCATCCAAAGGGCCTTCCA
CACCAATCACCGACCAGAAAACGAAAGATTTCACAGAAAAAGTTGTCGCAAAAATTAAAA
ACTTTTTGGAAAACACAGAAGATTCGGAAATTGTGTTGGAACCATGTAACAGTTATCTAA
GAAAAATATTATTTGAGAACATTCCTGCTGCATTTCCCGGTAAAATCCTGGTCGAGTCGC
GCACTGACGAACAGACTCATCAGCGCCACATAGTGGTGGTACGTGGTGCGAGCGCCTCGT
TACAAAAGGAACGAAACTTACAAGCCAAAGTTAAAGAGGAAAGCAACCTGGAAGAGGCTG
TGGGATTCTCGAAGATTGTTAAGAAACTGAGTCAAAGTCAAAAACTGATAGTTGGCCATA
ATATGTTGCTTGATGTCTTTTACACGATACAACAGTTTGTTTGCCCATTACCCGACGTGC
TTGAAGAGTTCAAGTCACTTGTGGGATGTGTGTTTCCTAAACTTCTTGACACAAAACTGA
TGGGGAGCATGCTGCCTTTTAGGGACCTACTATCAACCACAGCACTGGGTGATATGAACG
CGCGTTTACGTGAACCCCCCTTCCAACCGCCGGACATCACGGTACCCGGTAAATATAACG
TGGGGTCAACTAAAAGTCAGGATTCAAACTTACATGAAGCAGCATATGATGCCTATGTAA
CAGGTTCAGCTTTTCTATCAATGGTAAATTACTTGAAGTCGTTTCAAACAAATAAAAAGA
TTCTCACTTCGTTTTCATCTCTTTGTTCATTGATTTCACCTTATGTTAACAAAGTATTTT
TGATGCGAAGTTTTGACATCCCATATTTGAACTTAAGTGGTCCCGATTTATCCCCATGTC
GGGACCATGTGTTTCACCTTGAGTTCCCTGCGCTGTGGAAATCTAACGACCTGCGCCAAC
TTTTCTCACCTGTTGGCCAAATCCATATATCATGGATAAATGAAACTCAGTGTTGGATTG
GTCTTCACAACAAAACACAGACAAAGAACGTAAAAAGTCTTGTAAGTGGAAACTCAAACG
ATTCGTTTCGTCTTCGAACTTACAAAGAATATCAAAGTGATTCCACATCGGCATTACCAA
CAGCAACTAACGGCCGACAATCTTCTCCCTTCCGTCCAAGCTCTGCCACCAAATCGTTCA
TCAGCATAGTAGAGGCTGCACAGATAACAGACACGCCCACAACAACGTCATCAGCGCAGA
GGAAACGCCCACAGTCGGAAGTAACGTCACCTTTCGACACTTCGCATGCGTCACGTTCAC
CAGATGAACCAGAGTTGAAAAAACAGAAATCGATTGAAGATTGCGCAACAACAACAACAA
ACAAACAAGAAGAAACAGAAGTCAAACAAACAACAACTAAAGTGAAAAACTCGACTTCCA
CGTTTCATGTTCCAGATGAATGGTAATAATGATGACGTCATACCACGAAGGCGTCATATA
AAATGATAACCATCATACAATGATGATTTCACATAATGGTGATGTCATGCAAGCATGACG
TTATACATGGATGACGTCATACATAATCAGTGATGATGTCATGGAAGGTAGAATGATGAC
ATCACAATAGTTGAAAAAGCGCGTCTTTTCTAAACGTTTTCAACATCACATGAATAAATA
TCACATTTTCTACCCCA
| Pfam |
RNase_CAF1 (IPR006941) - T[2-384] 3.3E-77 |
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[2-118] 2.4E-50 - T[259-397] 2.4E-50 |
| Gene3D |
RNaseH_sf (IPR036397) - T[2-129] 2.0E-105 - T[238-390] 2.0E-105 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[147-237] 2.0E-105 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[165-234] 2.75E-12 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[168-236] 10.841 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[427-498] 1.41E-6 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[428-524] 1.9E-26 |
| Pfam |
PolyA-riboNase_RNA_binding (IPR014789) - T[433-512] 1.6E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PARN_HUMAN | 43.931 % | 426 | 8.55E-142 |
| PNDC1_HUMAN | 28.918 % | 141 | 5.0E-36 |