- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'KH2012:KH.S460.4.v1....' >
- Transcript 'Moocul.CG.ELv1_2.S34...' >
- Transcript 'KH2012:KH.L122.5.v1....'
Transcript Model
Transcript Id
KH2012:KH.L122.5.v1.A.SL2-1
Possible name(s)
PARN; PNLDC1
Gene model
Location
KhL122 [28,982 / 33,197]
Amino acid sequence
Length: 654
>KH.L122.5.v1.A.SL2-1
CFIIKFTISDTNMDITRANFTETLPIVSKAIDESSFICIDGEFTGLTNHRYNLTSYDSPE
ERYLKLHSNTENFMLLQFGMCTFSWKEDEQKYQVDAFNFYIFPFRSSFPGVPDRIFSCQA
SSLDFLTLQDFDFNKAIKEGIPFLRPSEEASVRSAIEEKQAYRQSTYKSPAKFDGVGRSP
SSKGPSTPITDQKTKDFTEKVVAKIKNFLENTEDSEIVLEPCNSYLRKILFENIPAAFPG
KILVESRTDEQTHQRHIVVVRGASASLQKERNLQAKVKEESNLEEAVGFSKIVKKLSQSQ
KLIVGHNMLLDVFYTIQQFVCPLPDVLEEFKSLVGCVFPKLLDTKLMGSMLPFRDLLSTT
ALGDMNARLREPPFQPPDITVPGKYNVGSTKSQDSNLHEAAYDAYVTGSAFLSMVNYLKS
FQTNKKILTSFSSLCSLISPYVNKVFLMRSFDIPYLNLSGPDLSPCRDHVFHLEFPALWK
SNDLRQLFSPVGQIHISWINETQCWIGLHNKTQTKNVKSLVSGNSNDSFRLRTYKEYQSD
STSALPTATNGRQSSPFRPSSATKSFISIVEAAQITDTPTTTSSAQRKRPQSEVTSPFDT
SHASRSPDEPELKKQKSIEDCATTTTNKQEETEVKQTTTKVKNSTSTFHVPDEW
Nucleotide sequence
Length: 2,197
>KH2012:KH.L122.5.v1.A.SL2-1
ATGCTTTATAATAAAGTTTACAATATCTGATACAAATATGGATATAACACGAGCAAACTT
TACCGAAACTTTACCGATAGTCAGCAAAGCGATTGACGAATCAAGTTTTATCTGCATTGA
TGGGGAATTCACCGGTTTAACGAACCATCGGTATAATTTAACGTCCTATGATTCGCCAGA
GGAACGTTATTTGAAATTGCATTCAAACACAGAAAATTTTATGCTGCTGCAGTTTGGAAT
GTGCACTTTTTCATGGAAGGAAGACGAACAAAAATATCAAGTTGATGCGTTTAACTTTTA
CATCTTCCCGTTCCGTTCCTCGTTTCCTGGAGTTCCTGATCGGATATTTTCATGCCAAGC
TTCAAGTCTTGATTTCTTGACTTTACAAGACTTTGATTTCAACAAAGCAATAAAAGAAGG
GATCCCATTTCTTCGACCAAGTGAAGAAGCTTCTGTTAGATCTGCGATTGAAGAAAAACA
AGCTTATCGTCAATCTACTTACAAATCACCAGCCAAGTTTGACGGCGTTGGTCGTAGCCC
TTCATCCAAAGGGCCTTCCACACCAATCACCGACCAGAAAACGAAAGATTTCACAGAAAA
AGTTGTCGCAAAAATTAAAAACTTTTTGGAAAACACAGAAGATTCGGAAATTGTGTTGGA
ACCATGTAACAGTTATCTAAGAAAAATATTATTTGAGAACATTCCTGCTGCATTTCCCGG
TAAAATCCTGGTCGAGTCGCGCACTGACGAACAGACTCATCAGCGCCACATAGTGGTGGT
ACGTGGTGCGAGCGCCTCGTTACAAAAGGAACGAAACTTACAAGCCAAAGTTAAAGAGGA
AAGCAACCTGGAAGAGGCTGTGGGATTCTCGAAGATTGTTAAGAAACTGAGTCAAAGTCA
AAAACTGATAGTTGGCCATAATATGTTGCTTGATGTCTTTTACACGATACAACAGTTTGT
TTGCCCATTACCCGACGTGCTTGAAGAGTTCAAGTCACTTGTGGGATGTGTGTTTCCTAA
ACTTCTTGACACAAAACTGATGGGGAGCATGCTGCCTTTTAGGGACCTACTATCAACCAC
AGCACTGGGTGATATGAACGCGCGTTTACGTGAACCCCCCTTCCAACCGCCGGACATCAC
GGTACCCGGTAAATATAACGTGGGGTCAACTAAAAGTCAGGATTCAAACTTACATGAAGC
AGCATATGATGCCTATGTAACAGGTTCAGCTTTTCTATCAATGGTAAATTACTTGAAGTC
GTTTCAAACAAATAAAAAGATTCTCACTTCGTTTTCATCTCTTTGTTCATTGATTTCACC
TTATGTTAACAAAGTATTTTTGATGCGAAGTTTTGACATCCCATATTTGAACTTAAGTGG
TCCCGATTTATCCCCATGTCGGGACCATGTGTTTCACCTTGAGTTCCCTGCGCTGTGGAA
ATCTAACGACCTGCGCCAACTTTTCTCACCTGTTGGCCAAATCCATATATCATGGATAAA
TGAAACTCAGTGTTGGATTGGTCTTCACAACAAAACACAGACAAAGAACGTAAAAAGTCT
TGTAAGTGGAAACTCAAACGATTCGTTTCGTCTTCGAACTTACAAAGAATATCAAAGTGA
TTCCACATCGGCATTACCAACAGCAACTAACGGCCGACAATCTTCTCCCTTCCGTCCAAG
CTCTGCCACCAAATCGTTCATCAGCATAGTAGAGGCTGCACAGATAACAGACACGCCCAC
AACAACGTCATCAGCGCAGAGGAAACGCCCACAGTCGGAAGTAACGTCACCTTTCGACAC
TTCGCATGCGTCACGTTCACCAGATGAACCAGAGTTGAAAAAACAGAAATCGATTGAAGA
TTGCGCAACAACAACAACAAACAAACAAGAAGAAACAGAAGTCAAACAAACAACAACTAA
AGTGAAAAACTCGACTTCCACGTTTCATGTTCCAGATGAATGGTAATAATGATGACGTCA
TACCACGAAGGCGTCATATAAAATGATAACCATCATACAATGATGATTTCACATAATGGT
GATGTCATGCAAGCATGACGTTATACATGGATGACGTCATACATAATCAGTGATGATGTC
ATGGAAGGTAGAATGATGACATCACAATAGTTGAAAAAGCGCGTCTTTTCTAAACGTTTT
CAACATCACATGAATAAATATCACATTTTCTACCCCA
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[13-145] 1.9E-55 - T[286-424] 1.9E-55 |
| Gene3D |
RNaseH_sf (IPR036397) - T[14-156] 4.7E-111 - T[265-417] 4.7E-111 |
| Pfam |
RNase_CAF1 (IPR006941) - T[15-411] 2.5E-82 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[174-264] 4.7E-111 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[192-261] 3.01E-12 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[195-263] 10.841 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[454-525] 1.41E-6 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[455-551] 2.0E-26 |
| Pfam |
PolyA-riboNase_RNA_binding (IPR014789) - T[460-539] 1.7E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PARN_HUMAN | 43.925 % | 438 | 4.91E-146 |
| PNDC1_HUMAN | 28.918 % | 142 | 5.21E-36 |