- Transcript 'Moocul.CG.ELv1_2.S34...' >
- Transcript 'KH2012:KH.L122.5.v1....' >
- Clone 'ciht018d21' >
- Transcript 'KH2012:KH.L122.5.v1....' >
- Transcript 'KH2012:KH.L122.5.v1....'
Transcript Model
Transcript Id
KH2012:KH.L122.5.v1.A.ND1-1
Possible name(s)
PARN; PNLDC1
Gene model
Location
KhL122 [28,982 / 33,201]
Amino acid sequence
Length: 655
>KH.L122.5.v1.A.ND1-1
RCFIIKFTISDTNMDITRANFTETLPIVSKAIDESSFICIDGEFTGLTNHRYNLTSYDSP
EERYLKLHSNTENFMLLQFGMCTFSWKEDEQKYQVDAFNFYIFPFRSSFPGVPDRIFSCQ
ASSLDFLTLQDFDFNKAIKEGIPFLRPSEEASVRSAIEEKQAYRQSTYKSPAKFDGVGRS
PSSKGPSTPITDQKTKDFTEKVVAKIKNFLENTEDSEIVLEPCNSYLRKILFENIPAAFP
GKILVESRTDEQTHQRHIVVVRGASASLQKERNLQAKVKEESNLEEAVGFSKIVKKLSQS
QKLIVGHNMLLDVFYTIQQFVCPLPDVLEEFKSLVGCVFPKLLDTKLMGSMLPFRDLLST
TALGDMNARLREPPFQPPDITVPGKYNVGSTKSQDSNLHEAAYDAYVTGSAFLSMVNYLK
SFQTNKKILTSFSSLCSLISPYVNKVFLMRSFDIPYLNLSGPDLSPCRDHVFHLEFPALW
KSNDLRQLFSPVGQIHISWINETQCWIGLHNKTQTKNVKSLVSGNSNDSFRLRTYKEYQS
DSTSALPTATNGRQSSPFRPSSATKSFISIVEAAQITDTPTTTSSAQRKRPQSEVTSPFD
TSHASRSPDEPELKKQKSIEDCATTTTNKQEETEVKQTTTKVKNSTSTFHVPDEW
Nucleotide sequence
Length: 2,201
>KH2012:KH.L122.5.v1.A.ND1-1
TTAGATGCTTTATAATAAAGTTTACAATATCTGATACAAATATGGATATAACACGAGCAA
ACTTTACCGAAACTTTACCGATAGTCAGCAAAGCGATTGACGAATCAAGTTTTATCTGCA
TTGATGGGGAATTCACCGGTTTAACGAACCATCGGTATAATTTAACGTCCTATGATTCGC
CAGAGGAACGTTATTTGAAATTGCATTCAAACACAGAAAATTTTATGCTGCTGCAGTTTG
GAATGTGCACTTTTTCATGGAAGGAAGACGAACAAAAATATCAAGTTGATGCGTTTAACT
TTTACATCTTCCCGTTCCGTTCCTCGTTTCCTGGAGTTCCTGATCGGATATTTTCATGCC
AAGCTTCAAGTCTTGATTTCTTGACTTTACAAGACTTTGATTTCAACAAAGCAATAAAAG
AAGGGATCCCATTTCTTCGACCAAGTGAAGAAGCTTCTGTTAGATCTGCGATTGAAGAAA
AACAAGCTTATCGTCAATCTACTTACAAATCACCAGCCAAGTTTGACGGCGTTGGTCGTA
GCCCTTCATCCAAAGGGCCTTCCACACCAATCACCGACCAGAAAACGAAAGATTTCACAG
AAAAAGTTGTCGCAAAAATTAAAAACTTTTTGGAAAACACAGAAGATTCGGAAATTGTGT
TGGAACCATGTAACAGTTATCTAAGAAAAATATTATTTGAGAACATTCCTGCTGCATTTC
CCGGTAAAATCCTGGTCGAGTCGCGCACTGACGAACAGACTCATCAGCGCCACATAGTGG
TGGTACGTGGTGCGAGCGCCTCGTTACAAAAGGAACGAAACTTACAAGCCAAAGTTAAAG
AGGAAAGCAACCTGGAAGAGGCTGTGGGATTCTCGAAGATTGTTAAGAAACTGAGTCAAA
GTCAAAAACTGATAGTTGGCCATAATATGTTGCTTGATGTCTTTTACACGATACAACAGT
TTGTTTGCCCATTACCCGACGTGCTTGAAGAGTTCAAGTCACTTGTGGGATGTGTGTTTC
CTAAACTTCTTGACACAAAACTGATGGGGAGCATGCTGCCTTTTAGGGACCTACTATCAA
CCACAGCACTGGGTGATATGAACGCGCGTTTACGTGAACCCCCCTTCCAACCGCCGGACA
TCACGGTACCCGGTAAATATAACGTGGGGTCAACTAAAAGTCAGGATTCAAACTTACATG
AAGCAGCATATGATGCCTATGTAACAGGTTCAGCTTTTCTATCAATGGTAAATTACTTGA
AGTCGTTTCAAACAAATAAAAAGATTCTCACTTCGTTTTCATCTCTTTGTTCATTGATTT
CACCTTATGTTAACAAAGTATTTTTGATGCGAAGTTTTGACATCCCATATTTGAACTTAA
GTGGTCCCGATTTATCCCCATGTCGGGACCATGTGTTTCACCTTGAGTTCCCTGCGCTGT
GGAAATCTAACGACCTGCGCCAACTTTTCTCACCTGTTGGCCAAATCCATATATCATGGA
TAAATGAAACTCAGTGTTGGATTGGTCTTCACAACAAAACACAGACAAAGAACGTAAAAA
GTCTTGTAAGTGGAAACTCAAACGATTCGTTTCGTCTTCGAACTTACAAAGAATATCAAA
GTGATTCCACATCGGCATTACCAACAGCAACTAACGGCCGACAATCTTCTCCCTTCCGTC
CAAGCTCTGCCACCAAATCGTTCATCAGCATAGTAGAGGCTGCACAGATAACAGACACGC
CCACAACAACGTCATCAGCGCAGAGGAAACGCCCACAGTCGGAAGTAACGTCACCTTTCG
ACACTTCGCATGCGTCACGTTCACCAGATGAACCAGAGTTGAAAAAACAGAAATCGATTG
AAGATTGCGCAACAACAACAACAAACAAACAAGAAGAAACAGAAGTCAAACAAACAACAA
CTAAAGTGAAAAACTCGACTTCCACGTTTCATGTTCCAGATGAATGGTAATAATGATGAC
GTCATACCACGAAGGCGTCATATAAAATGATAACCATCATACAATGATGATTTCACATAA
TGGTGATGTCATGCAAGCATGACGTTATACATGGATGACGTCATACATAATCAGTGATGA
TGTCATGGAAGGTAGAATGATGACATCACAATAGTTGAAAAAGCGCGTCTTTTCTAAACG
TTTTCAACATCACATGAATAAATATCACATTTTCTACCCCA
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[14-146] 1.9E-55 - T[287-425] 1.9E-55 |
| Gene3D |
RNaseH_sf (IPR036397) - T[15-157] 4.8E-111 - T[266-418] 4.8E-111 |
| Pfam |
RNase_CAF1 (IPR006941) - T[16-412] 2.5E-82 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[175-265] 4.8E-111 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[193-262] 3.01E-12 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[196-264] 10.841 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[455-526] 1.41E-6 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[456-552] 2.0E-26 |
| Pfam |
PolyA-riboNase_RNA_binding (IPR014789) - T[461-540] 1.7E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PARN_HUMAN | 43.925 % | 438 | 3.96E-146 |
| PNDC1_HUMAN | 28.918 % | 142 | 5.66E-36 |