- Transcript 'KH2012:KH.C1.83.v1.A...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.L18.5.v1.A...' >
- Transcript 'KH2012:KH.C12.329.v2...' >
- Transcript 'KH2012:KH.L108.18.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.18.v1.B.SL1-1
Possible name(s)
GNB3; PWP1; SNRNP40
Gene model
Location
KhL108 [218,544 / 232,003]
Amino acid sequence
Length: 658
>KH.L108.18.v1.B.SL1-1
YHSQQLFISYYYVTMDIDDDEIKGSSQIFCMTWVPKKAAKKVPDRILLSTDELKSVLNVK
NQNEEDSESSDDEDVIDDDVTDDDVTNDDVRNDDVTNDDVTNNDITDDDDLKEFDMDNYD
DENDTLQDGGISSLVVFPTNEDDPYITKNINEDSEDEKEEMEALNICDDDNLLINARCEA
DYNSLEIHVYNKKTQDFYVHHDVPLSGAPLCMEWLDFDPGNLEDEKTNDKGNFVAVGNIN
SLIEVWDLDVLNTLEPAFVLGVPQEHHRKLLRSGESNFGHTDAVLDISWNSKSRNKLLSA
SADHMVALWNLEVGKVEKFFTSHKEKVQCLSWKPDSTNYLVSGAFDGRVVINDVRGQGSS
KWKFKGEIERVVWNVTDPSYFAASTDSGMVYYCDVRVPKSLFHWRAHEKAIPSMLMTSSA
LTSSLLYTASSDGRLKMWDLKGNIPKLIYERNMKMGMVHCMERNPDVLTTFGLGGEKGGI
RLWSPSSVFELSEHFPNAENVVATSDAPMAEDDLVMLNSAPDVLDVAGIGKSTEVDVRVT
RMPRLKKKILSESNLNGNQKLKIKKSLKNLSISGENLMESDNTGVVGSECANKKQRMVEN
CSQIISQTVDTNETADPTVVNDSSNVKDAQTKRVKSGSAKRRQRRKKTHTRKTALSGN
Nucleotide sequence
Length: 1,990
>KH2012:KH.L108.18.v1.B.SL1-1
ATACCATAGTCAGCAATTGTTCATCTCATATTATTACGTCACAATGGATATTGATGATGA
TGAAATAAAAGGTAGCAGCCAAATATTCTGCATGACATGGGTCCCAAAAAAAGCCGCCAA
GAAAGTTCCAGACAGAATCCTTTTATCGACTGATGAATTAAAAAGCGTGTTGAATGTCAA
GAACCAAAATGAAGAAGATTCTGAATCCAGTGATGATGAAGATGTCATAGATGATGATGT
CACAGATGATGATGTCACAAATGATGATGTTAGAAATGATGATGTCACAAATGATGATGT
CACAAATAATGATATCACGGATGATGATGATTTGAAAGAGTTCGACATGGATAATTATGA
TGATGAAAACGACACTTTACAAGACGGTGGAATTTCTTCATTAGTCGTCTTCCCCACCAA
CGAGGACGATCCTTATATTACAAAAAACATTAACGAAGATTCAGAAGATGAGAAAGAAGA
AATGGAGGCATTAAATATTTGTGACGACGACAACTTACTCATCAATGCTCGTTGCGAAGC
CGATTATAACTCTCTGGAGATTCATGTTTACAACAAGAAAACACAAGATTTCTATGTCCA
CCACGACGTCCCACTCTCTGGTGCTCCCTTGTGCATGGAATGGTTGGATTTTGATCCCGG
AAATTTGGAAGACGAGAAAACAAACGATAAAGGTAACTTTGTTGCTGTTGGAAACATCAA
CTCCCTTATTGAGGTTTGGGACTTAGATGTTTTAAATACACTGGAACCTGCGTTTGTACT
TGGTGTGCCGCAGGAACATCACAGAAAGTTGCTTCGTTCGGGTGAGAGTAACTTCGGGCA
CACCGATGCTGTTCTGGACATTTCTTGGAACTCTAAATCAAGAAACAAATTGTTATCTGC
GTCCGCTGACCACATGGTGGCACTATGGAACCTCGAAGTTGGGAAAGTGGAAAAGTTTTT
CACGAGTCATAAAGAAAAGGTGCAATGTTTGAGTTGGAAGCCTGACTCGACGAATTACCT
CGTATCCGGCGCATTTGATGGGCGTGTCGTAATCAATGACGTCAGAGGTCAAGGGTCATC
CAAGTGGAAGTTCAAAGGTGAAATTGAACGAGTGGTTTGGAACGTCACCGATCCTTCATA
TTTTGCGGCAAGCACTGATTCCGGAATGGTATACTATTGTGACGTCAGAGTACCGAAGTC
TTTGTTTCACTGGCGAGCTCACGAGAAAGCGATACCCTCGATGCTCATGACATCATCAGC
GCTGACGTCATCACTCCTTTATACAGCGTCGAGTGATGGAAGATTGAAAATGTGGGATTT
GAAAGGAAATATACCGAAGTTGATATATGAAAGGAATATGAAAATGGGTATGGTCCATTG
TATGGAGAGAAACCCTGATGTTCTAACTACATTTGGACTTGGTGGGGAAAAAGGAGGGAT
ACGATTATGGAGTCCTAGCAGTGTTTTTGAATTAAGCGAGCACTTCCCAAACGCTGAGAA
TGTTGTTGCAACATCCGATGCTCCGATGGCAGAAGATGATCTTGTGATGTTGAACTCTGC
TCCTGATGTCCTGGATGTTGCTGGGATCGGGAAGAGCACGGAAGTGGATGTTAGGGTCAC
AAGGATGCCAAGATTAAAGAAGAAGATTTTATCAGAATCGAATTTAAACGGAAATCAAAA
ACTGAAAATCAAAAAATCTTTGAAAAATCTTTCAATTTCTGGGGAAAATTTAATGGAATC
GGACAATACGGGTGTTGTGGGTTCTGAATGCGCAAATAAGAAGCAAAGAATGGTCGAAAA
CTGTTCCCAGATTATATCACAAACTGTAGATACGAATGAAACAGCTGACCCTACGGTTGT
GAATGATAGTTCTAACGTTAAAGACGCTCAAACTAAAAGAGTTAAATCCGGTAGTGCGAA
AAGGCGGCAGCGGCGAAAGAAAACGCATACACGTAAAACGGCATTAAGTGGAAATTAATA
AATTTTATCC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[26-498] 2.5E-39 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[187-484] 9.47E-40 |
| SMART |
WD40_repeat (IPR001680) - T[190-247] 97.0 - T[267-310] 6.2E-5 - T[313-353] 2.7E-4 - T[355-394] 85.0 - T[397-439] 0.23 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[277-319] 11.277 - T[320-355] 9.305 - T[404-441] 9.706 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[277-493] 21.146 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[297-311] . - T[426-440] . |
| Pfam |
WD40_repeat (IPR001680) - T[318-351] 0.15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PWP1_HUMAN | 38.9 % | 317 | 4.9E-101 |