- Transcript 'KH2012:KH.L18.5.v1.A...' >
- Transcript 'KH2012:KH.L18.5.v1.A...' >
- Transcript 'KH2012:KH.L108.18.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.18.v1.B.nonSL8-1
Possible name(s)
GNB3; PWP1; SNRNP40
Gene model
Location
KhL108 [218,529 / 232,003]
Amino acid sequence
Length: 663
>KH.L108.18.v1.B.nonSL8-1
TCHHRYHSQQLFISYYYVTMDIDDDEIKGSSQIFCMTWVPKKAAKKVPDRILLSTDELKS
VLNVKNQNEEDSESSDDEDVIDDDVTDDDVTNDDVRNDDVTNDDVTNNDITDDDDLKEFD
MDNYDDENDTLQDGGISSLVVFPTNEDDPYITKNINEDSEDEKEEMEALNICDDDNLLIN
ARCEADYNSLEIHVYNKKTQDFYVHHDVPLSGAPLCMEWLDFDPGNLEDEKTNDKGNFVA
VGNINSLIEVWDLDVLNTLEPAFVLGVPQEHHRKLLRSGESNFGHTDAVLDISWNSKSRN
KLLSASADHMVALWNLEVGKVEKFFTSHKEKVQCLSWKPDSTNYLVSGAFDGRVVINDVR
GQGSSKWKFKGEIERVVWNVTDPSYFAASTDSGMVYYCDVRVPKSLFHWRAHEKAIPSML
MTSSALTSSLLYTASSDGRLKMWDLKGNIPKLIYERNMKMGMVHCMERNPDVLTTFGLGG
EKGGIRLWSPSSVFELSEHFPNAENVVATSDAPMAEDDLVMLNSAPDVLDVAGIGKSTEV
DVRVTRMPRLKKKILSESNLNGNQKLKIKKSLKNLSISGENLMESDNTGVVGSECANKKQ
RMVENCSQIISQTVDTNETADPTVVNDSSNVKDAQTKRVKSGSAKRRQRRKKTHTRKTAL
SGN
Nucleotide sequence
Length: 2,005
>KH2012:KH.L108.18.v1.B.nonSL8-1
AACTTGCCATCACAGATACCATAGTCAGCAATTGTTCATCTCATATTATTACGTCACAAT
GGATATTGATGATGATGAAATAAAAGGTAGCAGCCAAATATTCTGCATGACATGGGTCCC
AAAAAAAGCCGCCAAGAAAGTTCCAGACAGAATCCTTTTATCGACTGATGAATTAAAAAG
CGTGTTGAATGTCAAGAACCAAAATGAAGAAGATTCTGAATCCAGTGATGATGAAGATGT
CATAGATGATGATGTCACAGATGATGATGTCACAAATGATGATGTTAGAAATGATGATGT
CACAAATGATGATGTCACAAATAATGATATCACGGATGATGATGATTTGAAAGAGTTCGA
CATGGATAATTATGATGATGAAAACGACACTTTACAAGACGGTGGAATTTCTTCATTAGT
CGTCTTCCCCACCAACGAGGACGATCCTTATATTACAAAAAACATTAACGAAGATTCAGA
AGATGAGAAAGAAGAAATGGAGGCATTAAATATTTGTGACGACGACAACTTACTCATCAA
TGCTCGTTGCGAAGCCGATTATAACTCTCTGGAGATTCATGTTTACAACAAGAAAACACA
AGATTTCTATGTCCACCACGACGTCCCACTCTCTGGTGCTCCCTTGTGCATGGAATGGTT
GGATTTTGATCCCGGAAATTTGGAAGACGAGAAAACAAACGATAAAGGTAACTTTGTTGC
TGTTGGAAACATCAACTCCCTTATTGAGGTTTGGGACTTAGATGTTTTAAATACACTGGA
ACCTGCGTTTGTACTTGGTGTGCCGCAGGAACATCACAGAAAGTTGCTTCGTTCGGGTGA
GAGTAACTTCGGGCACACCGATGCTGTTCTGGACATTTCTTGGAACTCTAAATCAAGAAA
CAAATTGTTATCTGCGTCCGCTGACCACATGGTGGCACTATGGAACCTCGAAGTTGGGAA
AGTGGAAAAGTTTTTCACGAGTCATAAAGAAAAGGTGCAATGTTTGAGTTGGAAGCCTGA
CTCGACGAATTACCTCGTATCCGGCGCATTTGATGGGCGTGTCGTAATCAATGACGTCAG
AGGTCAAGGGTCATCCAAGTGGAAGTTCAAAGGTGAAATTGAACGAGTGGTTTGGAACGT
CACCGATCCTTCATATTTTGCGGCAAGCACTGATTCCGGAATGGTATACTATTGTGACGT
CAGAGTACCGAAGTCTTTGTTTCACTGGCGAGCTCACGAGAAAGCGATACCCTCGATGCT
CATGACATCATCAGCGCTGACGTCATCACTCCTTTATACAGCGTCGAGTGATGGAAGATT
GAAAATGTGGGATTTGAAAGGAAATATACCGAAGTTGATATATGAAAGGAATATGAAAAT
GGGTATGGTCCATTGTATGGAGAGAAACCCTGATGTTCTAACTACATTTGGACTTGGTGG
GGAAAAAGGAGGGATACGATTATGGAGTCCTAGCAGTGTTTTTGAATTAAGCGAGCACTT
CCCAAACGCTGAGAATGTTGTTGCAACATCCGATGCTCCGATGGCAGAAGATGATCTTGT
GATGTTGAACTCTGCTCCTGATGTCCTGGATGTTGCTGGGATCGGGAAGAGCACGGAAGT
GGATGTTAGGGTCACAAGGATGCCAAGATTAAAGAAGAAGATTTTATCAGAATCGAATTT
AAACGGAAATCAAAAACTGAAAATCAAAAAATCTTTGAAAAATCTTTCAATTTCTGGGGA
AAATTTAATGGAATCGGACAATACGGGTGTTGTGGGTTCTGAATGCGCAAATAAGAAGCA
AAGAATGGTCGAAAACTGTTCCCAGATTATATCACAAACTGTAGATACGAATGAAACAGC
TGACCCTACGGTTGTGAATGATAGTTCTAACGTTAAAGACGCTCAAACTAAAAGAGTTAA
ATCCGGTAGTGCGAAAAGGCGGCAGCGGCGAAAGAAAACGCATACACGTAAAACGGCATT
AAGTGGAAATTAATAAATTTTATCC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[31-503] 2.9E-39 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[192-489] 1.34E-39 |
| SMART |
WD40_repeat (IPR001680) - T[195-252] 97.0 - T[272-315] 6.2E-5 - T[318-358] 2.7E-4 - T[360-399] 85.0 - T[402-444] 0.23 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[282-498] 21.146 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[282-324] 11.277 - T[325-360] 9.305 - T[409-446] 9.706 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[302-316] . - T[431-445] . |
| Pfam |
WD40_repeat (IPR001680) - T[323-356] 0.15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PWP1_HUMAN | 38.9 % | 317 | 6.71E-101 |